Hymenobacter paludis (LMG 27293, KCTC 32237, KBP-30)

Name: Hymenobacter paludis (LMG 27293, KCTC 32237, KBP-30)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140889

Type strain

Strain Designation KBP-30

Culture col. no. LMG 27293 KCTC 32237 KBP-30 KCTC 52533

NCBI tax ID(s) 1244895

Special Collections KCTC Literature strains

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Hymenobacter paludis KBP-30 is an aerobe, chemoheterotroph, Gram-negative prokaryote that forms circular colonies and was isolated from A water sample from the Banping Lake Wetland Park.

Gram-negative motile rod-shaped colony-forming aerobe chemoheterotroph 16S sequence

Name and taxonomic classification

SI-ID 272795

LMG 27293,KCTC 32237

@ref 20215

Last LPSN update 2025-12-16 10:03:42

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Hymenobacter

Species Hymenobacter paludis

Full scientific name Hymenobacter paludis Chen et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement
43719	negative	1.2-1.6 µm	0.4-0.8 µm	rod-shaped	gliding
67771				rod-shaped	gliding
67771	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43719	2.2-3.5 mm	Red	circular	3 days	R2A agar

Pigmentation

@ref	Production	Name
43719		flexirubin type pigments
43719		carotenoid pigment

Culture and growth conditions

Culture medium

@ref	Name	Growth
43719	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43719	positive	growth	10-37
43719	positive	optimum	20	psychrophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
43719	positive	optimum	6
43719	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43719	aerobe
67771	aerobe

Nutrition type

43719

Typechemoheterotroph

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43719		NaCl	positive	growth	0-1 %(w/v)
43719	non-halophilic	NaCl	positive	optimum	0 %(w/v)

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43719	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
43719	58143 ChEBI	5-dehydro-D-gluconate	+	builds acid from
43719	17128 ChEBI	adipate	-	assimilation
43719	58187 ChEBI	alginate	+	hydrolysis
43719	17925 ChEBI	alpha-D-glucose	+	anaerobic growth
43719	27613 ChEBI	amygdalin	-	builds acid from
43719	22599 ChEBI	arabinose	-	assimilation
43719	18305 ChEBI	arbutin	-	builds acid from
43719	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43719		casein	+	hydrolysis
43719	17057 ChEBI	cellobiose	-	builds acid from
43719	17057 ChEBI	cellobiose	+	anaerobic growth
43719	17029 ChEBI	chitin	-	hydrolysis
43719	16947 ChEBI	citrate	-	assimilation
43719	17108 ChEBI	D-arabinose	+	builds acid from
43719	18333 ChEBI	D-arabitol	-	builds acid from
43719	15824 ChEBI	D-fructose	+	anaerobic growth
43719	15824 ChEBI	D-fructose	+	builds acid from
43719	28847 ChEBI	D-fucose	-	builds acid from
43719	12936 ChEBI	D-galactose	-	builds acid from
43719	17634 ChEBI	D-glucose	-	builds acid from
43719	62318 ChEBI	D-lyxose	-	builds acid from
43719	16899 ChEBI	D-mannitol	-	anaerobic growth
43719	16899 ChEBI	D-mannitol	-	builds acid from
43719	16024 ChEBI	D-mannose	-	builds acid from
43719	16024 ChEBI	D-mannose	+	anaerobic growth
43719	16988 ChEBI	D-ribose	+	builds acid from
43719	17924 ChEBI	D-sorbitol	-	anaerobic growth
43719	17924 ChEBI	D-sorbitol	-	builds acid from
43719	16443 ChEBI	D-tagatose	+	builds acid from
43719	65327 ChEBI	D-xylose	+	builds acid from
43719	27689 ChEBI	decanoate	-	assimilation
43719	23652 ChEBI	dextrin	+	anaerobic growth
43719	16991 ChEBI	dna	+	hydrolysis
43719	17113 ChEBI	erythritol	-	builds acid from
43719	4853 ChEBI	esculin	-	hydrolysis
43719	4853 ChEBI	esculin	+	builds acid from
43719	16813 ChEBI	galactitol	-	builds acid from
43719	5291 ChEBI	gelatin	+	hydrolysis
43719	28066 ChEBI	gentiobiose	-	builds acid from
43719	24265 ChEBI	gluconate	-	assimilation
43719	24265 ChEBI	gluconate	-	builds acid from
43719	17234 ChEBI	glucose	-	assimilation
43719	17754 ChEBI	glycerol	-	builds acid from
43719	28087 ChEBI	glycogen	+	builds acid from
43719	15443 ChEBI	inulin	-	builds acid from
43719	30849 ChEBI	L-arabinose	+	builds acid from
43719	18403 ChEBI	L-arabitol	-	builds acid from
43719	18287 ChEBI	L-fucose	-	builds acid from
43719	62345 ChEBI	L-rhamnose	-	builds acid from
43719	17266 ChEBI	L-sorbose	-	builds acid from
43719	65328 ChEBI	L-xylose	-	builds acid from
43719	17716 ChEBI	lactose	-	builds acid from
43719	61995 ChEBI	lecithin	+	hydrolysis
43719	25115 ChEBI	malate	-	assimilation
43719	17306 ChEBI	maltose	-	assimilation
43719	17306 ChEBI	maltose	+	anaerobic growth
43719		maltose hydrate	+	builds acid from
43719	29864 ChEBI	mannitol	-	assimilation
43719	37684 ChEBI	mannose	-	assimilation
43719	6731 ChEBI	melezitose	-	builds acid from
43719	28053 ChEBI	melibiose	-	builds acid from
43719	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43719	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43719	37657 ChEBI	methyl D-glucoside	-	builds acid from
43719	17268 ChEBI	myo-inositol	-	builds acid from
43719	506227 ChEBI	N-acetylglucosamine	-	assimilation
43719	506227 ChEBI	N-acetylglucosamine	-	builds acid from
43719	17632 ChEBI	nitrate	-	reduction
43719	18401 ChEBI	phenylacetate	-	assimilation
43719	16634 ChEBI	raffinose	-	builds acid from
43719	16634 ChEBI	raffinose	+	anaerobic growth
43719	15963 ChEBI	ribitol	-	anaerobic growth
43719	15963 ChEBI	ribitol	-	builds acid from
43719	17814 ChEBI	salicin	+	builds acid from
43719	28017 ChEBI	starch	+	builds acid from
43719	28017 ChEBI	starch	+	hydrolysis
43719	17992 ChEBI	sucrose	-	builds acid from
43719	17992 ChEBI	sucrose	+	anaerobic growth
43719	27082 ChEBI	trehalose	-	builds acid from
43719	32528 ChEBI	turanose	-	builds acid from
43719	53424 ChEBI	tween 20	+	hydrolysis
43719	53423 ChEBI	tween 40	+	hydrolysis
43719	53425 ChEBI	tween 60	+	hydrolysis
43719	53426 ChEBI	tween 80	+	anaerobic growth
43719	53426 ChEBI	tween 80	+	hydrolysis
43719	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43719	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43719	acid phosphatase	+	3.1.3.2
43719	alkaline phosphatase	+	3.1.3.1
43719	alpha-chymotrypsin	-	3.4.21.1
43719	alpha-fucosidase	-	3.2.1.51
43719	alpha-galactosidase	-	3.2.1.22
43719	alpha-glucosidase	+	3.2.1.20
43719	alpha-glucosidase	-	3.2.1.20
43719	alpha-mannosidase	-	3.2.1.24
43719	arginine dihydrolase	-	3.5.3.6
43719	beta-galactosidase	+	3.2.1.23
43719	beta-glucuronidase	-	3.2.1.31
43719	catalase	+	1.11.1.6
43719	cystine arylamidase	+	3.4.11.3
43719	cytochrome oxidase	+	1.9.3.1
43719	esterase (C 4)	+
43719	esterase Lipase (C 8)	+
43719	leucine arylamidase	+	3.4.11.1
43719	lipase (C 14)	-
43719	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43719	naphthol-AS-BI-phosphohydrolase	+
43719	trypsin	-	3.4.21.4
43719	urease	+	3.5.1.5
43719	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43719

Fatty acid	Percentage
C15:0 anteiso	49.6
C14:0 iso	28.8
iso-C16:1I / C14:0 3-OH	4.9
C16:0 iso	3.5
C14:0 2OH	3.2
C13:0 3-OH / C15:1iH	2.8
C17:1 iso ω5c	1.8
C13:1	1.1
C16:0	0.8
C14:0 2OH	0.7
C17:0 3OH	0.6
C13:0 iso 3OH	0.5
C15:0 iso	0.5
C17:0 2OH	0.4
C14:0 iso 3OH	0.4
C17:1ω7c	0.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	-
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43719	A water sample from the Banping Lake Wetland Park	Kaohsiung City	Taiwan, Province of China	TWN	Asia	22.691	120.308 22.691/120.308
67771	From wetland	Banping Lake Wetland Park, the vicinity of Kaohsiung County	Taiwan, Province of China	TWN	Asia

Taxonmaps

69479

Global distribution of 16S sequence HF544322 (>99% sequence identity) for Hymenobacter paludis from Microbeatlas

Aquatic Samples	23
Soil Samples	20
Animal Samples	32
Plant Samples	4
Total Samples	79

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
43719	Hymenobacter sp. KBP-30 partial 16S rRNA gene, strain KBP-30	HF544322

GC content

@ref	GC-content (mol%)	Method
43719	60.3	high performance liquid chromatography (HPLC)
67771	60.3

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter edaphi sp. nov., isolated from abandoned arsenic-contaminated farmland soil.	Nie L, Fan X, Xiang D, Liao S, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.003578	2019
Phylogeny	Hymenobacter oligotrophus sp. nov., isolated from a contaminated agar plate.	Geng Y, Zhang Y, Tian J, Liu J, Qin K, Huang Y, Wei Z, Peng F	Antonie Van Leeuwenhoek	10.1007/s10482-019-01279-3	2019
Phylogeny	Hymenobacter jeollabukensis sp. nov., isolated from soil.	Ten LN, Han YE, Park KI, Kang IK, Han JS, Jung HY	J Microbiol	10.1007/s12275-018-8085-4	2018
Phylogeny	Hymenobacter gummosus sp. nov., isolated from a spring.	Chen WM, Chen WT, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002372	2017
Phylogeny	Hymenobacter paludis sp. nov., isolated from a marsh.	Chen WM, Chen ZH, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.000915	2016
Phylogeny	Hymenobacter busanensis sp. nov., radiation-resistant species isolated from soil in South Korea.	Lee SE, Ten LN, Park Y, Maeng S, Zhang J, Kim MK, Cha IT, Lee KE, Lee BH, Jung H-, Kim MK	Arch Microbiol	10.1007/s00203-020-02080-x	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43719	Wen-Ming Chen, Zih-Han Chen, Chiu-Chung Young, Shih-Yi Sheu: Hymenobacter paludis sp. nov., isolated from a marsh. IJSEM 66: 1546 - 1553 2016 ( DOI 10.1099/ijsem.0.000915 , PubMed 26801373 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hymenobacter paludis (LMG 27293, KCTC 32237, KBP-30)

Name and taxonomic classification