Name: Gaetbulibacter aquiaggeris KEM-8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140888

Type strain:

Species: Gaetbulibacter aquiaggeris

Strain Designation: KEM-8

Culture col. no.: KCTC 42198, NBRC 110553

Strain history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.

NCBI tax ID(s): 1735373 (species)

Section

Gaetbulibacter aquiaggeris KEM-8 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Seawater from Geumgang Estuary Bank .

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Gaetbulibacter*
	Species	**Gaetbulibacter aquiaggeris**
	Full Scientific Name (LPSN)	Gaetbulibacter aquiaggeris Jung et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43718]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43718]	Cell length	1-5 µm

[Ref.: #43718]	Cell width	0.2-1 µm

[Ref.: #43718]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43718]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43718]	Colony size	0.2-1 mm
[Ref.: #43718]	Colony color	Yellow
[Ref.: #43718]	Colony shape	circular
[Ref.: #43718]	Incubation period	5 days
[Ref.: #43718]	Cultivation medium used	MA agar

[Ref.: #43718]	Pigment production	yes
[Ref.: #43718]	Pigment name	Carotenoid
[Ref.: #43718]	Pigment production	no
[Ref.: #43718]	Pigment name	Flexirubin type
[Ref.: #43718]	Pigment production	no
[Ref.: #43718]	Pigment name	Bacteriochlorophyll alpha

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43718]

Culture medium

Marine agar (MA)

[Ref.: #43718]

Culture medium growth

		Temperature
[Ref.: #43718]	growth	4-32 °C
[Ref.: #43718]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #43718]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43718]			optimum	7-8
[Ref.: #43718]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43718]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43718]		NaCl		growth	0.5-4	%(w/v)
[Ref.: #43718]		NaCl		optimum	2-3	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43718]	acetate ChEBI	-	carbon source
[Ref.: #43718]	acetate ChEBI	-	energy source
[Ref.: #43718]	benzoate ChEBI	-	carbon source
[Ref.: #43718]	benzoate ChEBI	-	energy source
[Ref.: #43718]	casamino acids	-	growth
[Ref.: #43718]	casein	+	hydrolysis
[Ref.: #43718]	casitone	+	growth
[Ref.: #43718]	cellobiose ChEBI	-	builds acid from
[Ref.: #43718]	cellobiose ChEBI	-	carbon source
[Ref.: #43718]	cellobiose ChEBI	-	energy source
[Ref.: #43718]	citrate ChEBI	-	carbon source
[Ref.: #43718]	citrate ChEBI	-	energy source
[Ref.: #43718]	D-fructose ChEBI	-	carbon source
[Ref.: #43718]	D-fructose ChEBI	-	energy source
[Ref.: #43718]	D-fructose ChEBI	+	builds acid from
[Ref.: #43718]	D-galactose ChEBI	-	carbon source
[Ref.: #43718]	D-galactose ChEBI	-	energy source
[Ref.: #43718]	D-galactose ChEBI	+	builds acid from
[Ref.: #43718]	D-glucose ChEBI	-	carbon source
[Ref.: #43718]	D-glucose ChEBI	-	energy source
[Ref.: #43718]	D-glucose ChEBI	+	builds acid from
[Ref.: #43718]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43718]	D-mannose ChEBI	-	carbon source
[Ref.: #43718]	D-mannose ChEBI	-	energy source
[Ref.: #43718]	D-mannose ChEBI	+	builds acid from
[Ref.: #43718]	D-ribose ChEBI	-	builds acid from
[Ref.: #43718]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43718]	D-xylose ChEBI	-	builds acid from
[Ref.: #43718]	D-xylose ChEBI	-	carbon source
[Ref.: #43718]	D-xylose ChEBI	-	energy source
[Ref.: #43718]	esculin ChEBI	+	hydrolysis
[Ref.: #43718]	formate ChEBI	-	carbon source
[Ref.: #43718]	formate ChEBI	-	energy source
[Ref.: #43718]	gelatin ChEBI	-	hydrolysis
[Ref.: #43718]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43718]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43718]	L-arabinose ChEBI	-	carbon source
[Ref.: #43718]	L-arabinose ChEBI	-	energy source
[Ref.: #43718]	L-glutamate ChEBI	-	carbon source
[Ref.: #43718]	L-glutamate ChEBI	-	energy source
[Ref.: #43718]	L-malate ChEBI	-	carbon source
[Ref.: #43718]	L-malate ChEBI	-	energy source
[Ref.: #43718]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43718]	lactose ChEBI	-	builds acid from
[Ref.: #43718]	maltose ChEBI	-	carbon source
[Ref.: #43718]	maltose ChEBI	-	energy source
[Ref.: #43718]	maltose ChEBI	+	builds acid from
[Ref.: #43718]	melezitose ChEBI	+	builds acid from
[Ref.: #43718]	melibiose ChEBI	-	builds acid from
[Ref.: #43718]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43718]	nitrate ChEBI	-	reduction
[Ref.: #43718]	peptone	+/-	growth
[Ref.: #43718]	pyruvate ChEBI	-	carbon source
[Ref.: #43718]	pyruvate ChEBI	-	energy source
[Ref.: #43718]	raffinose ChEBI	-	builds acid from
[Ref.: #43718]	salicin ChEBI	-	carbon source
[Ref.: #43718]	salicin ChEBI	-	energy source
[Ref.: #43718]	starch ChEBI	+	hydrolysis
[Ref.: #43718]	succinate ChEBI	-	carbon source
[Ref.: #43718]	succinate ChEBI	-	energy source
[Ref.: #43718]	sucrose ChEBI	-	carbon source
[Ref.: #43718]	sucrose ChEBI	-	energy source
[Ref.: #43718]	sucrose ChEBI	+	builds acid from
[Ref.: #43718]	trehalose ChEBI	-	carbon source
[Ref.: #43718]	trehalose ChEBI	-	energy source
[Ref.: #43718]	trehalose ChEBI	+	builds acid from
[Ref.: #43718]	tryptone	+	growth
[Ref.: #43718]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43718]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43718]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43718]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43718]	tyrosine ChEBI	-	hydrolysis
[Ref.: #43718]	urea ChEBI	-	hydrolysis
[Ref.: #43718]	xanthine ChEBI	-	hydrolysis
[Ref.: #43718]	yeast extract	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43718]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #43718]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43718]	cefalotin ChEBI	yes	30	µg (disc)
[Ref.: #43718]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #43718]	gentamicin ChEBI				yes	30	µg (disc)
[Ref.: #43718]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43718]	lincomycin ChEBI	yes	15	µg (disc)
[Ref.: #43718]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43718]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43718]	oleandomycin ChEBI	yes	15	µg (disc)
[Ref.: #43718]	penicillin g ChEBI	yes	20	Unit (disc)
[Ref.: #43718]	polymyxin b ChEBI				yes	100	Unit (disc)
[Ref.: #43718]	streptomycin ChEBI	yes	50	µg (disc)
[Ref.: #43718]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43718]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43718]	acid phosphatase	+	3.1.3.2
[Ref.: #43718]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43718]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43718]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43718]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43718]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43718]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43718]	beta-galactosidase	+	3.2.1.23
[Ref.: #43718]	beta-glucosidase	-	3.2.1.21
[Ref.: #43718]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43718]	catalase	+	1.11.1.6
[Ref.: #43718]	cystine arylamidase	+	3.4.11.3
[Ref.: #43718]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43718]	esterase (C 4)	+
[Ref.: #43718]	esterase Lipase (C 8)	+
[Ref.: #43718]	leucine arylamidase	+	3.4.11.1
[Ref.: #43718]	lipase (C 14)	-
[Ref.: #43718]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43718]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43718]	trypsin	-	3.4.21.4
[Ref.: #43718]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43718]

Fatty acid	Percentage
C15:0 iso	20.1
C17:1 iso I / C17:1 anteiso B	19.1
C15:0 anteiso	8.2
C17:0 iso 3OH	7.2
C16:1ω7c / C16:1ω6c	5.4
C15:0 iso 3OH	4.8
C16:0	4.6
C16:1ω5c	4.5
C18:0	3.8
C17:0 iso	3.7
C14:0 anteiso	2.4
C15:1H iso / C13:0 3OH	1.7
C12:0	1.5
C18:1ω9c	1.4
C17:0 2OH	1.2
C15:0 2OH	1
C16:1 iso H	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43718]	Sample type/isolated from	Seawater from Geumgang Estuary Bank (Korean Peninsula)
[Ref.: #43718]	Geographic location (country and/or sea, region)	Geumgang Estuary
[Ref.: #43718]	Country	Republic of Korea
[Ref.: #43718]	Country ISO 3 Code	KOR
[Ref.: #43718]	Continent	Asia
[Ref.: #43718]	Geographic location	36.8260°/126.7390°

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Geumgang Estuary Bank
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	36.0136°/126.7400°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR424451 (>99% sequence identity) for Gaetbulibacter aquiaggeris subclade from Microbeatlas

Aquatic Samples	14
Soil Samples
Animal Samples
Plant Samples
Total Samples	14

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43718]	16S rRNA gene sequence	KR424451		GenBank

[Ref.: #43718]	GC-content	36 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	36.0 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43718]

Culture collection no.

KCTC 42198, NBRC 110553

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gaetbulibacter aquiaggeris sp. nov., a member of the Flavobacteriaceae isolated from seawater.	Jung YT, Lee JS, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000845	2015	*
Phylogeny	Yeosuana marina sp. nov., isolated from shallow-sea hydrothermal systems off Kueishantao Island.	Zhang Q, Lin D, Ye J, Lin TH, Li C, Lin H, Sun X, Tang K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004525	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43718

Yong-Taek Jung, Jung-Sook Lee, Jung-Hoon Yoon: Gaetbulibacter aquiaggeris sp. nov., a member of the Flavobacteriaceae isolated from seawater. IJSEM 66: 1131 - 1137 2016 ( DOI 10.1099/ijsem.0.000845 , PubMed 26669721 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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