Name: Taibaiella coffeisoli TZCO2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140869

Type strain:

Species: Taibaiella coffeisoli

Strain Designation: TZCO2

Culture col. no.: NCAIM B 02601, CCM 8601

NCBI tax ID(s): 1580872 (species)

Section

Taibaiella coffeisoli TZCO2 is an obligate aerobe, non-halophilic, Gram-negative bacterium that forms circular colonies and was isolated from The upper soil of a newly planted and irrigated coffee tree from a coffee plantation.

colony-forming
Gram-negative
rod-shaped
non-halophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Taibaiella*
	Species	**Taibaiella coffeisoli**
	Full Scientific Name (LPSN)	Taibaiella coffeisoli Szabó et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43693]	Gram stain	negative

[Ref.: #43693]	Cell length	1.2-1.4 µm

[Ref.: #43693]	Cell width	0.6-0.7 µm

[Ref.: #43693]	Cell shape	rod-shaped

[Ref.: #43693]	Motility	no

[Ref.: #43693]	Colony color	Yellowish-ochre
[Ref.: #43693]	Colony shape	circular
[Ref.: #43693]	Incubation period	5 days
[Ref.: #43693]	Cultivation medium used	TGY-10 agar plates

[Ref.: #43693]	Pigment production	yes
[Ref.: #43693]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TGY-10 agar plates

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43693]			growth	10-35 °C
[Ref.: #43693]			optimum	30 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43693]			optimum	7-7.5
[Ref.: #43693]			growth	6-8.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

obligate aerobe

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Ability of spore formation

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Halophily / tolerance level

non-halophilic

	Salt	Tested relation		Salt conc.
[Ref.: #43693]	NaCl		growth	0	%(w/v)
[Ref.: #43693]	NaCl		growth	0.5-1.5	%(w/v)
[Ref.: #43693]	NaCl	no	growth	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43693]	adipate ChEBI	-	assimilation
[Ref.: #43693]	amygdalin ChEBI	-	builds acid from
[Ref.: #43693]	arbutin ChEBI	-	builds acid from
[Ref.: #43693]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #43693]	casein	+	hydrolysis
[Ref.: #43693]	cellobiose ChEBI	-	builds acid from
[Ref.: #43693]	citrate ChEBI	-	assimilation
[Ref.: #43693]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43693]	D-fructose ChEBI	-	builds acid from
[Ref.: #43693]	D-galactose ChEBI	-	builds acid from
[Ref.: #43693]	D-mannitol ChEBI	-	assimilation
[Ref.: #43693]	D-ribose ChEBI	-	builds acid from
[Ref.: #43693]	D-trehalose ChEBI	-	builds acid from
[Ref.: #43693]	dna ChEBI	+	hydrolysis
[Ref.: #43693]	esculin ChEBI	-	hydrolysis
[Ref.: #43693]	gelatin ChEBI	+	assimilation
[Ref.: #43693]	gelatin ChEBI	+	hydrolysis
[Ref.: #43693]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43693]	gluconate ChEBI	-	assimilation
[Ref.: #43693]	glycerol ChEBI	-	builds acid from
[Ref.: #43693]	inulin ChEBI	-	builds acid from
[Ref.: #43693]	L-arabinose ChEBI	-	assimilation
[Ref.: #43693]	L-fucose ChEBI	-	builds acid from
[Ref.: #43693]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43693]	lactose ChEBI	-	builds acid from
[Ref.: #43693]	malate ChEBI	-	assimilation
[Ref.: #43693]	melezitose ChEBI	-	builds acid from
[Ref.: #43693]	melibiose ChEBI	-	builds acid from
[Ref.: #43693]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43693]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43693]	raffinose ChEBI	-	builds acid from
[Ref.: #43693]	salicin ChEBI	-	builds acid from
[Ref.: #43693]	starch ChEBI	-	hydrolysis
[Ref.: #43693]	sucrose ChEBI	-	builds acid from
[Ref.: #43693]	turanose ChEBI	-	builds acid from
[Ref.: #43693]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43693]	acid phosphatase	+	3.1.3.2
[Ref.: #43693]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43693]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43693]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43693]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43693]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43693]	beta-galactosidase	-	3.2.1.23
[Ref.: #43693]	beta-glucosidase	-	3.2.1.21
[Ref.: #43693]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43693]	catalase	+	1.11.1.6
[Ref.: #43693]	chymotrypsin	-	3.4.4.5
[Ref.: #43693]	cystine arylamidase	-	3.4.11.3
[Ref.: #43693]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43693]	esterase (C 4)	+
[Ref.: #43693]	esterase Lipase (C 8)	+
[Ref.: #43693]	leucine arylamidase	+	3.4.11.1
[Ref.: #43693]	lipase (C 14)	-
[Ref.: #43693]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43693]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43693]	trypsin	+	3.4.21.4
[Ref.: #43693]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43693]	Sample type/isolated from	The upper soil of a newly planted and irrigated coffee tree (Coffea arabica) from a coffee plantation
[Ref.: #43693]	Geographic location (country and/or sea, region)	Arusha, Tanzania
[Ref.: #43693]	Country	Tanzania
[Ref.: #43693]	Country ISO 3 Code	TZA
[Ref.: #43693]	Continent	Africa
[Ref.: #43693]	Geographic location	-3.3750°/36.6510°
[Ref.: #43693]	Isolation date	2014-01
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Plantation
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM505048 (>99% sequence identity) for Taibaiella coffeisoli subclade from Microbeatlas

Aquatic Samples	270
Soil Samples	649
Animal Samples	94
Plant Samples	367
Total Samples	1380

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43693]	16S rRNA gene sequence	KM505048		GenBank

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GC-content

51.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

NCAIM B 02601, CCM 8601

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taibaiella coffeisoli sp. nov., isolated from the soil of a coffee plantation.	Szabo I, Szoboszlay S, Tancsics A, Szerdahelyi SG, Szu Cs A, Rado J, Benedek T, Szabo L, Daood HG, Cserhati M, Kriszt B	Int J Syst Evol Microbiol	10.1099/ijsem.0.000873	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43693

István Szabó, Sándor Szoboszlay, András Táncsics, Soma G. Szerdahelyi, Ádám Szucs, Ju´lia Radó, Tibor Benedek, László Szabó, Hussein G. Daood, Mátyás Cserháti, Balázs Kriszt: Taibaiella coffeisoli sp. nov., isolated from the soil of a coffee plantation. IJSEM 66: 1627 - 1632 2016 ( DOI 10.1099/ijsem.0.000873 , PubMed 26738749 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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