Name: Nocardia rayongensis RY45-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140848

Type strain:

Species: Nocardia rayongensis

Strain Designation: RY45-3

Culture col. no.: JCM 19832, TISTR 2213, PCU 334

Strain history: S. Tanasupawat; Chulalongkorn Univ., Thailand; RY45-3.

NCBI tax ID(s): 1429072 (species)

Section

Nocardia rayongensis RY45-3 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from Soil sample collected from Nongjumrung peat swamp forest.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia rayongensis**
	Full Scientific Name (LPSN)	Nocardia rayongensis Tanasupawat et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43656]	Gram stain	positive

[Ref.: #43656]	Cell shape	rod-shaped

[Ref.: #43656]	Motility	no

[Ref.: #43656]	Incubation period	21 days
[Ref.: #43656]	Cultivation medium used	Yeast extract-malt extract agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43656]

Culture medium

Yeast extract-malt extract agar

[Ref.: #43656]

Culture medium growth

		Temperature
[Ref.: #43656]	growth	20-37 °C
[Ref.: #43656]	optimum	23-30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43656]			growth	4-9

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43656]		NaCl		maximum	6	%

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Observation

quinones: MK-8(H₄, ω-cycl)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43656]	cellobiose ChEBI	-	builds acid from
[Ref.: #43656]	cellobiose ChEBI	+/-	assimilation
[Ref.: #43656]	D-arabitol ChEBI	+	assimilation
[Ref.: #43656]	D-glucose ChEBI	+	assimilation
[Ref.: #43656]	D-glucose ChEBI	+	builds acid from
[Ref.: #43656]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43656]	D-mannitol ChEBI	+/-	assimilation
[Ref.: #43656]	D-mannose ChEBI	+	builds acid from
[Ref.: #43656]	D-mannose ChEBI	+/-	assimilation
[Ref.: #43656]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43656]	D-sorbose ChEBI	-	assimilation
[Ref.: #43656]	D-sorbose ChEBI	-	builds acid from
[Ref.: #43656]	D-xylose ChEBI	+	builds acid from
[Ref.: #43656]	D-xylose ChEBI	+/-	assimilation
[Ref.: #43656]	esculin ChEBI	+	hydrolysis
[Ref.: #43656]	gelatin ChEBI	-	hydrolysis
[Ref.: #43656]	L-arabinose ChEBI	-	assimilation
[Ref.: #43656]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43656]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43656]	melezitose ChEBI	-	assimilation
[Ref.: #43656]	melezitose ChEBI	-	builds acid from
[Ref.: #43656]	melibiose ChEBI	-	assimilation
[Ref.: #43656]	melibiose ChEBI	-	builds acid from
[Ref.: #43656]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43656]	nitrate ChEBI	+	reduction
[Ref.: #43656]	raffinose ChEBI	-	assimilation
[Ref.: #43656]	salicin ChEBI	-	assimilation
[Ref.: #43656]	salicin ChEBI	-	builds acid from
[Ref.: #43656]	starch ChEBI	-	hydrolysis
[Ref.: #43656]	sucrose ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #43656]	amikacin ChEBI	yes
[Ref.: #43656]	cefotaxime ChEBI		yes
[Ref.: #43656]	ceftriaxone ChEBI		yes
[Ref.: #43656]	ciprofloxacin ChEBI	yes
[Ref.: #43656]	clarithromycin ChEBI	yes
[Ref.: #43656]	imipenem ChEBI	yes
[Ref.: #43656]	linezolid ChEBI	yes
[Ref.: #43656]	minocycline ChEBI	yes

	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity
[Ref.: #43656]	10	amoxicillin	yes
[Ref.: #43656]	10	clavulanic acid ChEBI	yes
[Ref.: #43656]	26	sulfamethoxazole ChEBI	yes
[Ref.: #43656]	26	trimethoprim ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43656]	acid phosphatase	+	3.1.3.2
[Ref.: #43656]	alkaline phosphatase	+/-	3.1.3.1
[Ref.: #43656]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #43656]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43656]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43656]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43656]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43656]	beta-galactosidase	+	3.2.1.23
[Ref.: #43656]	beta-glucosidase	+	3.2.1.21
[Ref.: #43656]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43656]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43656]	esterase (C 4)	+
[Ref.: #43656]	esterase Lipase (C 8)	+
[Ref.: #43656]	leucine arylamidase	+	3.4.11.1
[Ref.: #43656]	lipase (C 14)	+/-
[Ref.: #43656]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43656]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43656]	trypsin	-	3.4.21.4
[Ref.: #43656]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43656]	Sample type/isolated from	Soil sample collected from Nongjumrung peat swamp forest
[Ref.: #43656]	Geographic location (country and/or sea, region)	Rayong Province
[Ref.: #43656]	Country	Thailand
[Ref.: #43656]	Country ISO 3 Code	THA
[Ref.: #43656]	Continent	Asia
[Ref.: #43656]	Geographic location	12.6510°/101.5460°
[Ref.: #43656]	Isolation date	2012-06

[Ref.: #67770]	Sample type/isolated from	Peat swamp forest soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rayong Province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43656]	16S rRNA gene sequence	AB889540		GenBank

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GC-content

71 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43656]

Culture collection no.

JCM 19832, TISTR 2213, PCU 334

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis.	Benndorf R, Schwitalla JW, Martin K, de Beer ZW, Vollmers J, Kaster AK, Poulsen M, Beemelmanns C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004398	2020	*
Phylogeny	Nocardia rayongensis sp. nov., isolated from Thai peat swamp forest soil.	Tanasupawat S, Phongsopitanun W, Suwanborirux K, Ohkuma M, Kudo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.000971	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43656

Somboon Tanasupawat, Wongsakorn Phongsopitanun, Khanit Suwanborirux, Moriya Ohkuma, Takuji Kudo: Nocardia rayongensis sp. nov., isolated from Thai peat swamp forest soil. IJSEM 66: 1950 - 1955 2016 ( DOI 10.1099/ijsem.0.000971 , PubMed 26873179 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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