Nocardia rayongensis (JCM 19832, TISTR 2213, PCU 334)

Name: Nocardia rayongensis (JCM 19832, TISTR 2213, PCU 334)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140848

Type strain

Strain Designation RY45-3

Culture col. no. JCM 19832 TISTR 2213 PCU 334 RY45-3

NCBI tax ID(s) 1429072

Special Collections JCM Literature strains

History JCM <-- S. Tanasupawat; Chulalongkorn Univ., Thailand; RY45-3.

Links

Nocardia rayongensis RY45-3 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from Soil sample collected from Nongjumrung peat swamp forest.

Gram-positive rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133389

JCM 19832

@ref 20215

Last LPSN update 2026-05-29 08:39:49

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Nocardia

Species Nocardia rayongensis

Full scientific name Nocardia rayongensis Tanasupawat et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
43656	positive	rod-shaped

Colony morphology

@ref	Incubation period	Medium used
43656	21 days	Yeast extract-malt extract agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43656	Yeast extract-malt extract agar

Culture temp

@ref	Growth	Type	Temperature (°C)
43656	positive	growth	20-37
43656	positive	optimum	23-30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
43656	positive	growth	4-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

43656

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43656	NaCl	positive	maximum	6 %

Observation

67770

Observationquinones: MK-8(H₄, ω-cycl)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43656	17057 ChEBI	cellobiose	-	builds acid from
43656	17057 ChEBI	cellobiose	+/-	assimilation
43656	18333 ChEBI	D-arabitol	+	assimilation
43656	17634 ChEBI	D-glucose	+	assimilation
43656	17634 ChEBI	D-glucose	+	builds acid from
43656	16899 ChEBI	D-mannitol	-	builds acid from
43656	16899 ChEBI	D-mannitol	+/-	assimilation
43656	16024 ChEBI	D-mannose	+	builds acid from
43656	16024 ChEBI	D-mannose	+/-	assimilation
43656	17924 ChEBI	D-sorbitol	-	builds acid from
43656	17317 ChEBI	D-sorbose	-	assimilation
43656	17317 ChEBI	D-sorbose	-	builds acid from
43656	65327 ChEBI	D-xylose	+	builds acid from
43656	65327 ChEBI	D-xylose	+/-	assimilation
43656	4853 ChEBI	esculin	+	hydrolysis
43656	5291 ChEBI	gelatin	-	hydrolysis
43656	30849 ChEBI	L-arabinose	-	assimilation
43656	30849 ChEBI	L-arabinose	-	builds acid from
43656	62345 ChEBI	L-rhamnose	-	builds acid from
43656	6731 ChEBI	melezitose	-	assimilation
43656	6731 ChEBI	melezitose	-	builds acid from
43656	28053 ChEBI	melibiose	-	assimilation
43656	28053 ChEBI	melibiose	-	builds acid from
43656	17268 ChEBI	myo-inositol	-	builds acid from
43656	17632 ChEBI	nitrate	+	reduction
43656	16634 ChEBI	raffinose	-	assimilation
43656	17814 ChEBI	salicin	-	assimilation
43656	17814 ChEBI	salicin	-	builds acid from
43656	28017 ChEBI	starch	-	hydrolysis
43656	17992 ChEBI	sucrose	-	assimilation

Antibiotic resistance

@ref	ChEBI	Group ID	Metabolite
43656	2637		amikacin
43656		10	amoxicillin
43656	204928		cefotaxime
43656	29007		ceftriaxone
43656	100241		ciprofloxacin
43656	3732		clarithromycin
43656	48947	10	clavulanic acid
43656	471744		imipenem
43656	63607		linezolid
43656	50694		minocycline
43656	9332	26	sulfamethoxazole
43656	45924	26	trimethoprim

Enzymes

@ref	Value	Activity	Ec
43656	acid phosphatase	+	3.1.3.2
43656	alkaline phosphatase	+/-	3.1.3.1
43656	alpha-chymotrypsin	+/-	3.4.21.1
43656	alpha-fucosidase	-	3.2.1.51
43656	alpha-galactosidase	-	3.2.1.22
43656	alpha-glucosidase	+	3.2.1.20
43656	alpha-mannosidase	-	3.2.1.24
43656	beta-galactosidase	+	3.2.1.23
43656	beta-glucosidase	+	3.2.1.21
43656	beta-glucuronidase	-	3.2.1.31
43656	cystine arylamidase	+/-	3.4.11.3
43656	esterase (C 4)	+
43656	esterase Lipase (C 8)	+
43656	leucine arylamidase	+	3.4.11.1
43656	lipase (C 14)	+/-
43656	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43656	naphthol-AS-BI-phosphohydrolase	+/-
43656	trypsin	-	3.4.21.4
43656	valine arylamidase	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
43656	Soil sample collected from Nongjumrung peat swamp forest	Rayong Province	Thailand	THA	Asia	12.651	101.546 12.651/101.546	2012-06
67770	Peat swamp forest soil	Rayong Province	Thailand	THA	Asia

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
43656	Nocardia rayongensis gene for 16S ribosomal RNA, partial sequence	AB889540
124043	Nocardia rayongensis strain PCU 334 16S ribosomal RNA gene, partial sequence.	MT758152	1334	1429072
124043	Nocardia rayongensis strain PCU 334 16S ribosomal RNA gene, partial sequence.	MT760009	1334	1429072

GC content

@ref	GC-content (mol%)	Method
43656	71	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Cutaneous Pyogranulomas Associated with Nocardia jiangxiensis in a Cat from the Eastern Caribbean.	Silkworth A, Cavanaugh R, Bolfa P, Becker AAMJ.	Trop Med Infect Dis	10.3390/tropicalmed4040130	2019
	Streptomyces rugosispiralis sp. nov., a Novel Actinobacterium Isolated from Peat Swamp Forest Soil That Produces Ansamycin Derivatives and Nocardamines.	Weeraphan T, Supong K, Sripreechasak P, Jutakanoke R, Kowinthanaphat S, Tanasupawat S, Pittayakhajonwut P, Phongsopitanun W.	Antibiotics (Basel)	10.3390/antibiotics12091467	2023
Phylogeny	Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis.	Benndorf R, Schwitalla JW, Martin K, de Beer ZW, Vollmers J, Kaster AK, Poulsen M, Beemelmanns C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004398	2020
Phylogeny	Nocardia rayongensis sp. nov., isolated from Thai peat swamp forest soil.	Tanasupawat S, Phongsopitanun W, Suwanborirux K, Ohkuma M, Kudo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.000971	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43656	Somboon Tanasupawat, Wongsakorn Phongsopitanun, Khanit Suwanborirux, Moriya Ohkuma, Takuji Kudo: Nocardia rayongensis sp. nov., isolated from Thai peat swamp forest soil. IJSEM 66: 1950 - 1955 2016 ( DOI 10.1099/ijsem.0.000971 , PubMed 26873179 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardia rayongensis (JCM 19832, TISTR 2213, PCU 334)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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