Name: Luteimonas terrae THG-MD21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140846

Type strain:

Species: Luteimonas terrae

Strain Designation: THG-MD21

Culture col. no.: KACC 18131, JCM 30122

Strain history: T.-H. Yi; Kyung Hee Univ., South Korea; THG-MD21.

NCBI tax ID(s): 1530191 (species)

Section

Luteimonas terrae THG-MD21 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from rhizosphere soil of Radix ophiopogonis.

colony-forming
Gram-negative
motile
rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Luteimonas*
	Species	**Luteimonas terrae**
	Full Scientific Name (LPSN)	Luteimonas terrae Ngo and Yin 2016

Information on morphological and physiological properties Morphology

[Ref.: #43652]	Gram stain	negative

[Ref.: #43652]	Cell length	1.1-1.7 µm

[Ref.: #43652]	Cell width	0.4-0.5 µm

[Ref.: #43652]	Cell shape	rod-shaped

[Ref.: #43652]	Motility	yes

[Ref.: #43652]	Flagellum arrangement	monotrichous, polar

[Ref.: #43652]	Colony size	0.5-1.5 mm
[Ref.: #43652]	Colony color	Bright Yellow
[Ref.: #43652]	Colony shape	circular
[Ref.: #43652]	Incubation period	2 days
[Ref.: #43652]	Cultivation medium used	Nutrient agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43652]

Culture medium

Nutrient agar (NA)

[Ref.: #43652]

Culture medium growth

		Temperature
[Ref.: #43652]	growth	4-45 °C
[Ref.: #43652]	optimum	25-30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #43652]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43652]			optimum	7-7.5
[Ref.: #43652]			growth	6.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43652]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43652]		NaCl		growth	0-5.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43652]	2-oxogluconate	-	assimilation
[Ref.: #43652]	3-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #43652]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43652]	acetate ChEBI	+	assimilation
[Ref.: #43652]	adipate ChEBI	-	assimilation
[Ref.: #43652]	arginine ChEBI	+	hydrolysis
[Ref.: #43652]	beta-D-galactoside ChEBI	+	hydrolysis
[Ref.: #43652]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #43652]	casein	+	hydrolysis
[Ref.: #43652]	cellobiose ChEBI	+	builds acid from
[Ref.: #43652]	chitin ChEBI	-	hydrolysis
[Ref.: #43652]	citrate ChEBI	-	assimilation
[Ref.: #43652]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43652]	D-fructose ChEBI	-	builds acid from
[Ref.: #43652]	D-glucose ChEBI	+	assimilation
[Ref.: #43652]	D-glucose ChEBI	+	builds acid from
[Ref.: #43652]	D-mannitol ChEBI	-	assimilation
[Ref.: #43652]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43652]	D-mannose ChEBI	-	builds acid from
[Ref.: #43652]	D-sorbitol ChEBI	+	assimilation
[Ref.: #43652]	decanoate ChEBI	-	assimilation
[Ref.: #43652]	dna ChEBI	+	hydrolysis
[Ref.: #43652]	erythritol ChEBI	-	builds acid from
[Ref.: #43652]	esculin ChEBI	+	hydrolysis
[Ref.: #43652]	esculin ferric citrate	+	builds acid from
[Ref.: #43652]	gelatin ChEBI	+	hydrolysis
[Ref.: #43652]	gluconate ChEBI	-	assimilation
[Ref.: #43652]	glucose ChEBI	+	builds acid from
[Ref.: #43652]	glucose ChEBI	+/-	fermentation
[Ref.: #43652]	glycerol ChEBI	-	builds acid from
[Ref.: #43652]	glycogen ChEBI	-	builds acid from
[Ref.: #43652]	glycogen ChEBI	+	assimilation
[Ref.: #43652]	itaconate ChEBI	+	assimilation
[Ref.: #43652]	L-alanine ChEBI	+	assimilation
[Ref.: #43652]	L-arabinose ChEBI	-	assimilation
[Ref.: #43652]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43652]	L-histidine ChEBI	+	assimilation
[Ref.: #43652]	L-proline ChEBI	-	assimilation
[Ref.: #43652]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43652]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43652]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #43652]	malate ChEBI	+	assimilation
[Ref.: #43652]	malonate ChEBI	+	assimilation
[Ref.: #43652]	maltose ChEBI	-	builds acid from
[Ref.: #43652]	maltose ChEBI	+	assimilation
[Ref.: #43652]	mannose ChEBI	+	assimilation
[Ref.: #43652]	myo-inositol ChEBI	-	assimilation
[Ref.: #43652]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43652]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43652]	nitrate ChEBI	+	reduction
[Ref.: #43652]	phenylacetate ChEBI	-	assimilation
[Ref.: #43652]	raffinose ChEBI	-	builds acid from
[Ref.: #43652]	ribitol ChEBI	-	builds acid from
[Ref.: #43652]	starch ChEBI	+	hydrolysis
[Ref.: #43652]	suberic acid ChEBI	+	assimilation
[Ref.: #43652]	sucrose ChEBI	+	assimilation
[Ref.: #43652]	trehalose ChEBI	-	builds acid from
[Ref.: #43652]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43652]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43652]	urea ChEBI	+	hydrolysis
[Ref.: #43652]	valerate ChEBI	+	assimilation
[Ref.: #43652]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43652]		acetoin ChEBI	no
[Ref.: #43652]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43652]		acetoin ChEBI	-
[Ref.: #43652]		glucose ChEBI		+/-

	Enzyme	Enzyme activity	EC number
[Ref.: #43652]	acid phosphatase	+	3.1.3.2
[Ref.: #43652]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43652]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43652]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43652]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43652]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43652]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43652]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43652]	beta-galactosidase	+	3.2.1.23
[Ref.: #43652]	beta-glucosidase	+	3.2.1.21
[Ref.: #43652]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43652]	catalase	+	1.11.1.6
[Ref.: #43652]	cystine arylamidase	+	3.4.11.3
[Ref.: #43652]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43652]	esterase (C 4)	+
[Ref.: #43652]	esterase Lipase (C 8)	+
[Ref.: #43652]	leucine arylamidase	+	3.4.11.1
[Ref.: #43652]	lipase (C 14)	-
[Ref.: #43652]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43652]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43652]	trypsin	-	3.4.21.4
[Ref.: #43652]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43652]

Fatty acid	Percentage
C18:1ω7c / C18:1ω6c	26.6
C16:1ω7c / C16:1ω6c	23.7
C16:0	23.2
C16:1 2OH	8.5
C14:0 3-OH / C16:1iso I	5.1
C16:0 3OH	2.4
C14:0	2.3
C18:1 2OH	2.2
C16:0 2OH	2
C12:0	1.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43652]	Sample type/isolated from	rhizosphere soil of Radix ophiopogonis
[Ref.: #43652]	Geographic location (country and/or sea, region)	Shangqiu, Henan Province
[Ref.: #43652]	Country	China
[Ref.: #43652]	Country ISO 3 Code	CHN
[Ref.: #43652]	Continent	Asia
[Ref.: #43652]	Geographic location	34.3770°/115.6590°
[Ref.: #43652]	Isolation date	2014-02

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of Radix ophiopogonis in Henan Province
[Ref.: #67770]	Host species	Radix ophiopogonis
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43652]	16S rRNA gene sequence	KJ769177.2		GenBank
[Ref.: #67770]	Luteimonas terrae strain THG-MD21 16S ribosomal RNA gene, partial sequence	KJ769177	1469	ENA	1530191 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Luteimonas terrae THG-MD21	GCA_004358165	contig	GenBank	1530191 tax ID

[Ref.: #43652]	GC-content	64.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	64.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Luteimonas terrae THG-MD21 NCBI: GCA_004358165.1
[Ref.: #69480]	motile	yes	84.264	yes
[Ref.: #69480]	flagellated	no	88.722	no
[Ref.: #69480]	gram-positive	no	98.335	yes
[Ref.: #69480]	anaerobic	no	98.06	yes
[Ref.: #69480]	aerobic	yes	95.945	no
[Ref.: #69480]	halophile	no	90.008	no
[Ref.: #69480]	spore-forming	no	96.776	no
[Ref.: #69480]	glucose-util	yes	89.738	yes
[Ref.: #69480]	thermophile	no	99.333	no
[Ref.: #69480]	glucose-ferment	no	89.947	no

Availability in culture collections External links

[Ref.: #43652]

Culture collection no.

KACC 18131, JCM 30122

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteimonas deserti sp. nov., a novel strain isolated from desert soil.	Huang XX, Shang J, Xu L, Yang R, Sun JQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005048	2021	*
Phylogeny	Luteimonas chenhongjianii, a novel species isolated from rectal contents of Tibetan Plateau pika (Ochotona curzoniae).	Zhang G, Lai XH, Yang J, Jin D, Pu J, Xiong Y, Yang C, Dong K, Huang Y, Luo X, Lu S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004151	2020	*
Phylogeny	Luteimonas rhizosphaerae sp. nov., isolated from the rhizosphere of Triticum aestivum L.	Zhao GY, Shao F, Zhang M, Zhang XJ, Wang JY, Fan SJ, Dai MX	Int J Syst Evol Microbiol	10.1099/ijsem.0.002649	2018	*
Phylogeny	Luteimonas terrae sp. nov., isolated from rhizosphere soil of Radix ophiopogonis.	Ngo HTT, Yin CS	Int J Syst Evol Microbiol	10.1099/ijsem.0.000901	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43652

Hien T. T. Ngo, Chang Shik Yin: Luteimonas terrae sp. nov., isolated from rhizosphere soil of Radix ophiopogonis. IJSEM 66: 1920 - 1925 2016 ( DOI 10.1099/ijsem.0.000901 , PubMed 26782356 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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