Name: Halomonas urumqiensis BZ-SZ-XY27
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140845

Type strain:

Species: Halomonas urumqiensis

Strain Designation: BZ-SZ-XY27

Culture col. no.: JCM 30202, CGMCC 1.12917, DSM 29014

Strain history: B. Zhao; Grad. Sch. of Chin. Acad. of Agric. Sci., China; BZ-SZ-XJ27.

NCBI tax ID(s): 1684789 (species)

Section

Halomonas urumqiensis BZ-SZ-XY27 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from a combined water and sediment sample from a saline-alkaline lake.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas urumqiensis**
	Full Scientific Name (LPSN)	Halomonas urumqiensis Zhang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43650]	Gram stain	negative

[Ref.: #43650]	Cell length	1.5-2 µm

[Ref.: #43650]	Cell width	1 µm

[Ref.: #43650]	Cell shape	rod-shaped

[Ref.: #43650]	Motility	yes

[Ref.: #43650]	Flagellum arrangement	monotrichous

[Ref.: #43650]	Colony size	1-2 mm
[Ref.: #43650]	Colony color	Creamy-white
[Ref.: #43650]	Colony shape	circular
[Ref.: #43650]	Incubation period	2-3 days
[Ref.: #43650]	Cultivation medium used	Agar medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43650]

Culture medium

Agar medium

[Ref.: #43650]

Culture medium growth

		Temperature
[Ref.: #43650]	growth	4-43 °C
[Ref.: #43650]	optimum	39 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #43650]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43650]			optimum	8-8.5
[Ref.: #43650]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43650]

Oxygen tolerance

aerobe

[Ref.: #43650]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43650]		NaCl		growth	0.22-4.32	M
[Ref.: #43650]		NaCl		optimum	1.42	M

[Ref.: #43650]	Observation	No growth occurs in the absence of Na+ or under anaerobic conditions
[Ref.: #67770]	Observation	quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43650]	(S)-lactate ChEBI	+	oxidation
[Ref.: #43650]	2-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #43650]	2-oxobutanoate ChEBI	+	oxidation
[Ref.: #43650]	2-oxoglutarate ChEBI	+	oxidation
[Ref.: #43650]	3-O-methyl-D-glucose ChEBI	+	oxidation
[Ref.: #43650]	4-hydroxyphenylacetic acid ChEBI	+	oxidation
[Ref.: #43650]	acetoacetate ChEBI	+	oxidation
[Ref.: #43650]	alpha-D-glucose ChEBI	+	builds acid from
[Ref.: #43650]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43650]	alpha-D-glucose ChEBI	+	energy source
[Ref.: #43650]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #43650]	beta-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #43650]	casein	-	hydrolysis
[Ref.: #43650]	cellobiose ChEBI	+	builds acid from
[Ref.: #43650]	cellobiose ChEBI	+	carbon source
[Ref.: #43650]	cellobiose ChEBI	+	energy source
[Ref.: #43650]	cellobiose ChEBI	+	oxidation
[Ref.: #43650]	D-arabitol ChEBI	+	oxidation
[Ref.: #43650]	D-aspartate ChEBI	-	carbon source
[Ref.: #43650]	D-aspartate ChEBI	-	energy source
[Ref.: #43650]	D-aspartate ChEBI	-	nitrogen source
[Ref.: #43650]	D-fructose ChEBI	+	builds acid from
[Ref.: #43650]	D-fructose ChEBI	+	carbon source
[Ref.: #43650]	D-fructose ChEBI	+	energy source
[Ref.: #43650]	D-fructose ChEBI	+	oxidation
[Ref.: #43650]	D-fructose 6-phosphate ChEBI	+	oxidation
[Ref.: #43650]	D-fucose ChEBI	+	builds acid from
[Ref.: #43650]	D-fucose ChEBI	+	carbon source
[Ref.: #43650]	D-fucose ChEBI	+	energy source
[Ref.: #43650]	D-fucose ChEBI	+	oxidation
[Ref.: #43650]	D-galactose ChEBI	-	builds acid from
[Ref.: #43650]	D-galactose ChEBI	+	carbon source
[Ref.: #43650]	D-galactose ChEBI	+	energy source
[Ref.: #43650]	D-galactose ChEBI	+	oxidation
[Ref.: #43650]	D-galacturonic acid ChEBI	+	oxidation
[Ref.: #43650]	D-glucose 6-phosphate ChEBI	+	oxidation
[Ref.: #43650]	D-glucuronate ChEBI	+	oxidation
[Ref.: #43650]	D-mannitol ChEBI	+	oxidation
[Ref.: #43650]	D-mannose ChEBI	-	builds acid from
[Ref.: #43650]	D-mannose ChEBI	-	carbon source
[Ref.: #43650]	D-mannose ChEBI	-	energy source
[Ref.: #43650]	D-ribose ChEBI	-	builds acid from
[Ref.: #43650]	D-ribose ChEBI	-	carbon source
[Ref.: #43650]	D-ribose ChEBI	-	energy source
[Ref.: #43650]	D-serine ChEBI	-	carbon source
[Ref.: #43650]	D-serine ChEBI	-	energy source
[Ref.: #43650]	D-serine ChEBI	-	nitrogen source
[Ref.: #43650]	D-sorbitol ChEBI	+	oxidation
[Ref.: #43650]	D-xylose ChEBI	+	builds acid from
[Ref.: #43650]	D-xylose ChEBI	+	carbon source
[Ref.: #43650]	D-xylose ChEBI	+	energy source
[Ref.: #43650]	dextrin ChEBI	+	oxidation
[Ref.: #43650]	dna ChEBI	-	hydrolysis
[Ref.: #43650]	fumarate ChEBI	-	growth
[Ref.: #43650]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #43650]	gamma-aminobutyric acid ChEBI	+	energy source
[Ref.: #43650]	gamma-aminobutyric acid ChEBI	+	nitrogen source
[Ref.: #43650]	gelatin ChEBI	+	hydrolysis
[Ref.: #43650]	gelatin ChEBI	+	oxidation
[Ref.: #43650]	gentiobiose ChEBI	+	oxidation
[Ref.: #43650]	glucose ChEBI	-	fermentation
[Ref.: #43650]	glucuronamide ChEBI	+	carbon source
[Ref.: #43650]	glucuronamide ChEBI	+	energy source
[Ref.: #43650]	glucuronamide ChEBI	+	nitrogen source
[Ref.: #43650]	glycerol ChEBI	+	oxidation
[Ref.: #43650]	glycine-proline ChEBI	-	carbon source
[Ref.: #43650]	glycine-proline ChEBI	-	energy source
[Ref.: #43650]	glycine-proline ChEBI	-	nitrogen source
[Ref.: #43650]	glycine-proline ChEBI	+	oxidation
[Ref.: #43650]	hippurate ChEBI	-	hydrolysis
[Ref.: #43650]	L-alanine ChEBI	-	carbon source
[Ref.: #43650]	L-alanine ChEBI	-	energy source
[Ref.: #43650]	L-alanine ChEBI	-	nitrogen source
[Ref.: #43650]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43650]	L-arabinose ChEBI	+	carbon source
[Ref.: #43650]	L-arabinose ChEBI	+	energy source
[Ref.: #43650]	L-arginine ChEBI	-	carbon source
[Ref.: #43650]	L-arginine ChEBI	-	energy source
[Ref.: #43650]	L-arginine ChEBI	-	nitrogen source
[Ref.: #43650]	L-aspartate ChEBI	-	carbon source
[Ref.: #43650]	L-aspartate ChEBI	-	energy source
[Ref.: #43650]	L-aspartate ChEBI	-	nitrogen source
[Ref.: #43650]	L-glutamate ChEBI	-	carbon source
[Ref.: #43650]	L-glutamate ChEBI	-	energy source
[Ref.: #43650]	L-glutamate ChEBI	-	nitrogen source
[Ref.: #43650]	L-histidine ChEBI	-	carbon source
[Ref.: #43650]	L-histidine ChEBI	-	energy source
[Ref.: #43650]	L-histidine ChEBI	-	nitrogen source
[Ref.: #43650]	L-pyroglutamic acid ChEBI	-	carbon source
[Ref.: #43650]	L-pyroglutamic acid ChEBI	-	energy source
[Ref.: #43650]	L-pyroglutamic acid ChEBI	-	nitrogen source
[Ref.: #43650]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43650]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43650]	L-rhamnose ChEBI	+	energy source
[Ref.: #43650]	L-rhamnose ChEBI	+	oxidation
[Ref.: #43650]	L-serine ChEBI	-	carbon source
[Ref.: #43650]	L-serine ChEBI	-	energy source
[Ref.: #43650]	L-serine ChEBI	-	nitrogen source
[Ref.: #43650]	lactose ChEBI	-	builds acid from
[Ref.: #43650]	lactose ChEBI	-	carbon source
[Ref.: #43650]	lactose ChEBI	-	energy source
[Ref.: #43650]	maltose ChEBI	+	builds acid from
[Ref.: #43650]	maltose ChEBI	+	carbon source
[Ref.: #43650]	maltose ChEBI	+	energy source
[Ref.: #43650]	maltose ChEBI	+	oxidation
[Ref.: #43650]	manganese dioxide	-	growth
[Ref.: #43650]	melezitose ChEBI	+	builds acid from
[Ref.: #43650]	melezitose ChEBI	+	carbon source
[Ref.: #43650]	melezitose ChEBI	+	energy source
[Ref.: #43650]	melibiose ChEBI	+	oxidation
[Ref.: #43650]	methyl (R)-lactate ChEBI	+	oxidation
[Ref.: #43650]	methyl D-glucoside ChEBI	+	oxidation
[Ref.: #43650]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #43650]	nitrate ChEBI	+	reduction
[Ref.: #43650]	nitrite ChEBI	-	reduction
[Ref.: #43650]	pectin ChEBI	+	oxidation
[Ref.: #43650]	raffinose ChEBI	+	builds acid from
[Ref.: #43650]	raffinose ChEBI	+	carbon source
[Ref.: #43650]	raffinose ChEBI	+	energy source
[Ref.: #43650]	raffinose ChEBI	+	oxidation
[Ref.: #43650]	salicin ChEBI	+	oxidation
[Ref.: #43650]	sodium nitrate ChEBI	-	growth
[Ref.: #43650]	sodium nitrite ChEBI	-	growth
[Ref.: #43650]	sodium thiosulfate ChEBI	-	growth
[Ref.: #43650]	starch ChEBI	-	hydrolysis
[Ref.: #43650]	sucrose ChEBI	+	builds acid from
[Ref.: #43650]	sucrose ChEBI	+	carbon source
[Ref.: #43650]	sucrose ChEBI	+	energy source
[Ref.: #43650]	trehalose ChEBI	+	oxidation
[Ref.: #43650]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43650]	tween 40 ChEBI	+	oxidation
[Ref.: #43650]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43650]	tyrosine ChEBI	+	degradation
[Ref.: #43650]	yeast extract	+	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43650]	amoxicillin ChEBI				yes	10	µg (disc)
[Ref.: #43650]	ampicillin ChEBI				yes	50	µg (disc)
[Ref.: #43650]	carbenicillin ChEBI				yes	100	µg (disc)
[Ref.: #43650]	cefalotin ChEBI				yes	30	µg (disc)
[Ref.: #43650]	cefotaxime ChEBI				yes	30	µg (disc)
[Ref.: #43650]	cefoxitin ChEBI	yes	30	µg (disc)
[Ref.: #43650]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43650]	clarithromycin ChEBI	yes	15	µg (disc)
[Ref.: #43650]	clindamycin ChEBI	yes	2	µg (disc)
[Ref.: #43650]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43650]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #43650]	kanamycin ChEBI				yes	50	µg (disc)
[Ref.: #43650]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #43650]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43650]	penicillin ChEBI				yes	10	Unit (disc)
[Ref.: #43650]	polymyxin b ChEBI				yes	300	Unit (disc)
[Ref.: #43650]	rifampicin ChEBI	yes	30	µg (disc)
[Ref.: #43650]	streptomycin ChEBI				yes	300	µg (disc)
[Ref.: #43650]	sulfamethoxazole ChEBI				yes	300	µg (disc)
[Ref.: #43650]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #43650]	vancomycin ChEBI				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43650]	acetoin ChEBI	yes
[Ref.: #43650]	hydrogen sulfide ChEBI	no
[Ref.: #43650]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43650]		acetoin ChEBI	+
[Ref.: #43650]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43650]	acid phosphatase	+	3.1.3.2
[Ref.: #43650]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43650]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43650]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43650]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43650]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43650]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43650]	arginine decarboxylase	+	4.1.1.19
[Ref.: #43650]	beta-galactosidase	+	3.2.1.23
[Ref.: #43650]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43650]	catalase	+	1.11.1.6
[Ref.: #43650]	cystine arylamidase	+	3.4.11.3
[Ref.: #43650]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43650]	esterase (C 4)	+
[Ref.: #43650]	esterase Lipase (C 8)	+
[Ref.: #43650]	leucine arylamidase	+	3.4.11.1
[Ref.: #43650]	lipase (C 14)	-
[Ref.: #43650]	lysine decarboxylase	+	4.1.1.18
[Ref.: #43650]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43650]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43650]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #43650]	trypsin	-	3.4.21.4
[Ref.: #43650]	urease	-	3.5.1.5
[Ref.: #43650]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	92.86	26 of 28
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	vitamin B6 metabolism	90.91	10 of 11
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	arginine metabolism	83.33	20 of 24
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	purine metabolism	80.85	76 of 94
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	4-hydroxymandelate degradation	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	degradation of sugar acids	76	19 of 25
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	alginate biosynthesis	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	polyamine pathway	73.91	17 of 23
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	oxidative phosphorylation	63.74	58 of 91
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	tryptophan metabolism	60.53	23 of 38
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	lysine metabolism	59.52	25 of 42
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	degradation of pentoses	46.43	13 of 28
[Ref.: #66794]	d-xylose degradation	45.45	5 of 11
[Ref.: #66794]	phenol degradation	45	9 of 20
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	phenylacetate degradation (aerobic)	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	starch degradation	30	3 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43650]	Sample type/isolated from	a combined water and sediment sample from a saline-alkaline lake
[Ref.: #43650]	Geographic location (country and/or sea, region)	Urumqi City, Xinjiang Uyghur Autonomous Region
[Ref.: #43650]	Country	China
[Ref.: #43650]	Country ISO 3 Code	CHN
[Ref.: #43650]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Saline-alkaline lake in the Xinjiang Uyghur Autonomous Region of China
* marker position based on {}

Isolation sources categories

#Condition	#Alkaline	-
#Condition	#Saline	-
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43650]	16S rRNA gene sequence	KM066108		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halomonas urumqiensis BZ-SZ-XJ27	GCA_002879635	scaffold	GenBank	1684789 tax ID
[Ref.: #66792]	Halomonas urumqiensis CGMCC 1.12917	GCA_014653135	scaffold	GenBank	1684789 tax ID	*
[Ref.: #66792]	Halomonas urumqiensis strain CGMCC 1.12917	1684789.7	wgs	PATRIC	1684789 tax ID	*

[Ref.: #43650]

GC-content

61.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas urumqiensis CGMCC 1.12917 NCBI: GCA_014653135.1
[Ref.: #69480]	motile	yes	90.806	yes
[Ref.: #69480]	flagellated	yes	69.499	no
[Ref.: #69480]	gram-positive	no	98.748	yes
[Ref.: #69480]	anaerobic	no	99.136	no
[Ref.: #69480]	aerobic	yes	95.104	no
[Ref.: #69480]	halophile	yes	93.274	yes
[Ref.: #69480]	spore-forming	no	97.244	no
[Ref.: #69480]	thermophile	no	98.798	yes
[Ref.: #69480]	glucose-util	yes	90.786	yes
[Ref.: #69480]	glucose-ferment	no	81.051	yes

Availability in culture collections External links

[Ref.: #43650]

Culture collection no.

JCM 30202, CGMCC 1.12917, DSM 29014

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas endophytica sp. nov., isolated from liquid in the stems of Populus euphratica.	Chen C, Anwar N, Wu C, Fu G, Wang R, Zhang C, Wu Y, Sun C, Wu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002585	2018	*
Phylogeny	Halomonas urumqiensis sp. nov., a moderately halophilic bacterium isolated from a saline-alkaline lake.	Zhang S, Pan J, Lu W, Yan Y, Wang H, Wiegel J, Zhao B	Int J Syst Evol Microbiol	10.1099/ijsem.0.000975	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43650

Shanshan Zhang, Jiao Pan, Weidong Lu, Yanchun Yan, Haisheng Wang, Jurgen Wiegel, Baisuo Zhao: Halomonas urumqiensis sp. nov., a moderately halophilic bacterium isolated from a saline-alkaline lake. IJSEM 66: 1962 - 1969 2016 ( DOI 10.1099/ijsem.0.000975 , PubMed 26873696 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Halomonas urumqiensis CGMCC 1.12917

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