Name: Spirosoma carri TX0406
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140796

Type strain:

Species: Spirosoma carri

Strain Designation: TX0406

Culture col. no.: KACC 19013, NBRC 112494

NCBI tax ID(s): 1634991 (species)

Section

Spirosoma carri TX0406 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from a biofilm growing on the surface of automobile evaporator cores.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Spirosoma*
	Species	**Spirosoma carri**
	Full Scientific Name (LPSN)	Spirosoma carri Kim et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43574]	Gram stain	negative

[Ref.: #43574]	Cell length	0.89-1.63 µm

[Ref.: #43574]	Cell width	0.25-0.47 µm

[Ref.: #43574]	Cell shape	rod-shaped

[Ref.: #43574]	Motility	no

[Ref.: #43574]	Colony color	Yellow
[Ref.: #43574]	Colony shape	circular
[Ref.: #43574]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43574]			growth	15-37 °C
[Ref.: #43574]			optimum	25 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43574]			optimum	6.5
[Ref.: #43574]			growth	6-7

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43574]		NaCl		growth	0-1.5	%(w/v)
[Ref.: #43574]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43574]	adipate ChEBI	-	assimilation
[Ref.: #43574]	amygdalin ChEBI	+/-	fermentation
[Ref.: #43574]	amygdalin ChEBI	+/-	oxidation
[Ref.: #43574]	casein	-	degradation
[Ref.: #43574]	cellulose ChEBI	-	degradation
[Ref.: #43574]	chitin ChEBI	-	degradation
[Ref.: #43574]	citrate ChEBI	-	assimilation
[Ref.: #43574]	D-glucose ChEBI	-	fermentation
[Ref.: #43574]	D-glucose ChEBI	-	oxidation
[Ref.: #43574]	D-glucose ChEBI	+	assimilation
[Ref.: #43574]	D-mannitol ChEBI	-	assimilation
[Ref.: #43574]	D-mannitol ChEBI	-	fermentation
[Ref.: #43574]	D-mannitol ChEBI	-	oxidation
[Ref.: #43574]	D-mannose ChEBI	+	assimilation
[Ref.: #43574]	D-sorbitol ChEBI	-	fermentation
[Ref.: #43574]	D-sorbitol ChEBI	-	oxidation
[Ref.: #43574]	decanoate ChEBI	-	assimilation
[Ref.: #43574]	dna ChEBI	+	degradation
[Ref.: #43574]	esculin ChEBI	+	hydrolysis
[Ref.: #43574]	gelatin ChEBI	+/-	hydrolysis
[Ref.: #43574]	L-arabinose ChEBI	-	fermentation
[Ref.: #43574]	L-arabinose ChEBI	-	oxidation
[Ref.: #43574]	L-arabinose ChEBI	+	assimilation
[Ref.: #43574]	L-rhamnose ChEBI	+/-	fermentation
[Ref.: #43574]	L-rhamnose ChEBI	+/-	oxidation
[Ref.: #43574]	malate ChEBI	-	assimilation
[Ref.: #43574]	maltose ChEBI	+	assimilation
[Ref.: #43574]	melibiose ChEBI	+/-	fermentation
[Ref.: #43574]	melibiose ChEBI	+/-	oxidation
[Ref.: #43574]	myo-inositol ChEBI	-	fermentation
[Ref.: #43574]	myo-inositol ChEBI	-	oxidation
[Ref.: #43574]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43574]	nitrate ChEBI	-	reduction
[Ref.: #43574]	phenylacetate ChEBI	-	assimilation
[Ref.: #43574]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43574]	sodium citrate ChEBI	-	assimilation
[Ref.: #43574]	starch ChEBI	-	degradation
[Ref.: #43574]	sucrose ChEBI	+/-	fermentation
[Ref.: #43574]	sucrose ChEBI	+/-	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43574]	chloramphenicol ChEBI	yes	60	µg/mL
[Ref.: #43574]	erythromycin ChEBI	yes	15	µg/mL
[Ref.: #43574]	nalidixic acid ChEBI	yes	30	µg/mL
[Ref.: #43574]	penicillin g ChEBI	yes	10	µg/mL
[Ref.: #43574]	rifampicin ChEBI	yes	15	µg/mL
[Ref.: #43574]	tetracycline ChEBI	yes	50	µg/mL

	Metabolite	Production
[Ref.: #43574]	acetoin ChEBI	yes
[Ref.: #43574]	hydrogen sulfide ChEBI	no
[Ref.: #43574]	indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43574]	acid phosphatase	+	3.1.3.2
[Ref.: #43574]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43574]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43574]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43574]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43574]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43574]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43574]	arginine dihydrolase	+/-	3.5.3.6
[Ref.: #43574]	beta-galactosidase	+	3.2.1.23
[Ref.: #43574]	beta-glucosidase	+	3.2.1.21
[Ref.: #43574]	beta-glucuronidase	+/-	3.2.1.31
[Ref.: #43574]	catalase	+	1.11.1.6
[Ref.: #43574]	cystine arylamidase	+	3.4.11.3
[Ref.: #43574]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43574]	esterase (C 4)	+
[Ref.: #43574]	esterase Lipase (C 8)	+
[Ref.: #43574]	gelatinase	+/-
[Ref.: #43574]	leucine arylamidase	+	3.4.11.1
[Ref.: #43574]	lipase (C 14)	-
[Ref.: #43574]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43574]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43574]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43574]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43574]	trypsin	+	3.4.21.4
[Ref.: #43574]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43574]	urease	-	3.5.1.5
[Ref.: #43574]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C15:0 anteiso	20.3
C15:0 iso	17.2
C13:0 iso	11.2
C13:0 anteiso	8.2
C14:0	7.7
C15:0 iso 3OH	3.9
iso-C13:0 3-OH / iso-C15:1H	3.6
C15:0	3.4
C15:0 2OH	3.2
C16:0	3
C15:1ω5c	1.6
C13:0	1.5
cyclo-C18:0 / cyclo-C17:0	1.4
C14:0 iso	1.2
C12:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43574]	Sample type/isolated from	a biofilm growing on the surface of automobile evaporator cores
[Ref.: #43574]	Geographic location (country and/or sea, region)	South Korea
[Ref.: #43574]	Country	Republic of Korea
[Ref.: #43574]	Country ISO 3 Code	KOR
[Ref.: #43574]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Environmental	#Biofilm	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP185152 (>99% sequence identity) for Spirosoma from Microbeatlas

Aquatic Samples	1147
Soil Samples	278
Animal Samples	629
Plant Samples	112
Total Samples	2166

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43574]	16S rRNA gene sequence	KP185152		GenBank

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GC-content

58.7 mol%

real time PCR (RTD-PCR)

Availability in culture collections External links

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Culture collection no.

KACC 19013, NBRC 112494

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spirosoma carri sp. nov., isolated from an automobile air conditioning system.	Kim DU, Lee H, Lee S, Park S, Yoon JH, Park SY, Ka JO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002276	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43574

Dong-Uk Kim, Hyosun Lee, Suyeon Lee, Sooyeon Park, Jung-Hoon Yoon, So Yoon Park, Jong-Ok Ka: Spirosoma carri sp. nov., isolated from an automobile air conditioning system. IJSEM 67: 4195 - 4199 2017 ( DOI 10.1099/ijsem.0.002276 , PubMed 28920847 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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