Sphingomonas frigidaeris (KACC 19285, JCM 32053, KER25-10)

Name: Sphingomonas frigidaeris (KACC 19285, JCM 32053, KER25-10)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140795

Type strain

Strain Designation KER25-10

Culture col. no. KACC 19285 JCM 32053 KER25-10

NCBI tax ID(s) 1975704

Special Collections JCM Literature strains

Links

Sphingomonas frigidaeris KER25-10 is an obligate aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from an air conditioning system that operated in a laboratory.

Gram-negative rod-shaped colony-forming obligate aerobe 16S sequence

Name and taxonomic classification

SI-ID 133487

JCM 32053

@ref 20215

Last LPSN update 2025-12-16 10:03:41

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species Sphingomonas frigidaeris

Full scientific name Sphingomonas frigidaeris Lee and Jeon 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43573	negative	0.8-2 µm	0.5-0.8 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43573	0.2-0.4 mm	Yellow	circular	3 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43573	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43573	positive	growth	10-40
43573	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43573	positive	optimum	6-7
43573	positive	growth	4-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

43573

Oxygen toleranceobligate aerobe

Spore formation

43573

Spore formationno

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43573		NaCl	positive	growth	0-3 %(w/v)
43573	non-halophilic	NaCl	positive	optimum	0 %(w/v)

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43573	62064 ChEBI	2,3-butanediol	-	oxidation
43573	64552 ChEBI	2-hydroxybutyrate	-	oxidation
43573	16763 ChEBI	2-oxobutanoate	-	oxidation
43573	30916 ChEBI	2-oxoglutarate	+	oxidation
43573	28644 ChEBI	2-oxopentanoate	-	oxidation
43573	37054 ChEBI	3-hydroxybutyrate	+	oxidation
43573	16724 ChEBI	4-hydroxybutyrate	-	oxidation
43573	18101 ChEBI	4-hydroxyphenylacetic acid	-	oxidation
43573	30089 ChEBI	acetate	-	oxidation
43573	17128 ChEBI	adipate	-	assimilation
43573	40585 ChEBI	alpha-cyclodextrin	-	oxidation
43573	17925 ChEBI	alpha-D-glucose	+	oxidation
43573	73706 ChEBI	bromosuccinate	-	oxidation
43573		casein	-	hydrolysis
43573	17057 ChEBI	cellobiose	-	oxidation
43573	16383 ChEBI	cis-aconitate	-	oxidation
43573	16947 ChEBI	citrate	-	oxidation
43573	15570 ChEBI	D-alanine	-	oxidation
43573	18333 ChEBI	D-arabitol	-	oxidation
43573	15824 ChEBI	D-fructose	-	oxidation
43573	15895 ChEBI	D-galactonic acid lactone	+	oxidation
43573	12936 ChEBI	D-galactose	+	oxidation
43573	18024 ChEBI	D-galacturonic acid	+	oxidation
43573	8391 ChEBI	D-gluconate	-	oxidation
43573	17784 ChEBI	D-glucosaminic acid	-	oxidation
43573	17634 ChEBI	D-glucose	+	assimilation
43573	14314 ChEBI	D-glucose 6-phosphate	-	oxidation
43573	15748 ChEBI	D-glucuronate	-	oxidation
43573	16899 ChEBI	D-mannitol	-	assimilation
43573	16899 ChEBI	D-mannitol	-	oxidation
43573	16024 ChEBI	D-mannose	-	assimilation
43573	16024 ChEBI	D-mannose	-	oxidation
43573	27605 ChEBI	D-psicose	-	oxidation
43573	33801 ChEBI	D-saccharate	-	oxidation
43573	16523 ChEBI	D-serine	-	oxidation
43573	17924 ChEBI	D-sorbitol	+	oxidation
43573	27689 ChEBI	decanoate	-	assimilation
43573	17126 ChEBI	DL-carnitine	-	oxidation
43573	17113 ChEBI	erythritol	-	oxidation
43573	4853 ChEBI	esculin	+	hydrolysis
43573	16000 ChEBI	ethanolamine	+	oxidation
43573	15740 ChEBI	formate	-	oxidation
43573	16865 ChEBI	gamma-aminobutyric acid	-	oxidation
43573	5291 ChEBI	gelatin	-	hydrolysis
43573	28066 ChEBI	gentiobiose	-	oxidation
43573	17234 ChEBI	glucose	-	fermentation
43573	29042 ChEBI	glucose 1-phosphate	-	oxidation
43573	32323 ChEBI	glucuronamide	-	oxidation
43573	17754 ChEBI	glycerol	+	oxidation
43573	14336 ChEBI	glycerol 1-phosphate	-	oxidation
43573	28087 ChEBI	glycogen	+	oxidation
43573	73804 ChEBI	glycyl L-aspartic acid	-	oxidation
43573	73784 ChEBI	glycyl-l-glutamate	+	oxidation
43573	24741 ChEBI	hydroxyproline	-	oxidation
43573	17596 ChEBI	inosine	-	oxidation
43573	17240 ChEBI	itaconate	-	oxidation
43573	21217 ChEBI	L-alaninamide	+	oxidation
43573	16977 ChEBI	L-alanine	-	oxidation
43573	73786 ChEBI	L-alanylglycine	-	oxidation
43573	30849 ChEBI	L-arabinose	+	assimilation
43573	30849 ChEBI	L-arabinose	+	oxidation
43573	17196 ChEBI	L-asparagine	-	oxidation
43573	29991 ChEBI	L-aspartate	-	oxidation
43573	18287 ChEBI	L-fucose	+	oxidation
43573	29985 ChEBI	L-glutamate	+	oxidation
43573	15971 ChEBI	L-histidine	-	oxidation
43573	15603 ChEBI	L-leucine	-	oxidation
43573	15729 ChEBI	L-ornithine	-	oxidation
43573	17295 ChEBI	L-phenylalanine	-	oxidation
43573	17203 ChEBI	L-proline	-	oxidation
43573	18183 ChEBI	L-pyroglutamic acid	-	oxidation
43573	62345 ChEBI	L-rhamnose	+	oxidation
43573	17115 ChEBI	L-serine	-	oxidation
43573	16857 ChEBI	L-threonine	-	oxidation
43573	24996 ChEBI	lactate	+	oxidation
43573	17716 ChEBI	lactose	+	oxidation
43573	6359 ChEBI	lactulose	-	oxidation
43573	25115 ChEBI	malate	+	assimilation
43573	15792 ChEBI	malonate	-	oxidation
43573	17306 ChEBI	maltose	+	assimilation
43573	17306 ChEBI	maltose	+	oxidation
43573	28053 ChEBI	melibiose	-	oxidation
43573	37657 ChEBI	methyl D-glucoside	-	oxidation
43573	51850 ChEBI	methyl pyruvate	+	oxidation
43573	75146 ChEBI	monomethyl succinate	-	oxidation
43573	17268 ChEBI	myo-inositol	-	oxidation
43573	28037 ChEBI	N-acetylgalactosamine	-	oxidation
43573	506227 ChEBI	N-acetylglucosamine	-	assimilation
43573	506227 ChEBI	N-acetylglucosamine	-	oxidation
43573	17632 ChEBI	nitrate	-	reduction
43573	18401 ChEBI	phenylacetate	-	assimilation
43573	50048 ChEBI	phenylethylamine	-	oxidation
43573	32032 ChEBI	potassium gluconate	-	assimilation
43573	17272 ChEBI	propionate	-	oxidation
43573	17148 ChEBI	putrescine	-	oxidation
43573	26490 ChEBI	quinate	-	oxidation
43573	16634 ChEBI	raffinose	-	oxidation
43573	15963 ChEBI	ribitol	-	oxidation
43573	41865 ChEBI	sebacic acid	-	oxidation
43573	53258 ChEBI	sodium citrate	-	assimilation
43573	28017 ChEBI	starch	-	hydrolysis
43573	143136 ChEBI	succinamate	+	oxidation
43573	30031 ChEBI	succinate	+	oxidation
43573	17992 ChEBI	sucrose	-	oxidation
43573	17748 ChEBI	thymidine	-	oxidation
43573	27082 ChEBI	trehalose	+	oxidation
43573	32528 ChEBI	turanose	-	oxidation
43573	53424 ChEBI	tween 20	-	hydrolysis
43573	53423 ChEBI	tween 40	+	oxidation
43573	53426 ChEBI	tween 80	-	hydrolysis
43573	53426 ChEBI	tween 80	-	oxidation
43573	18186 ChEBI	tyrosine	+	hydrolysis
43573	16704 ChEBI	uridine	-	oxidation
43573	27248 ChEBI	urocanic acid	-	oxidation
43573	17151 ChEBI	xylitol	-	oxidation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43573	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43573	2-nitrophenyl beta-D-galactopyranoside	+	3.2.1.52
43573	acid phosphatase	+	3.1.3.2
43573	alkaline phosphatase	+	3.1.3.1
43573	alpha-chymotrypsin	+	3.4.21.1
43573	alpha-fucosidase	-	3.2.1.51
43573	alpha-galactosidase	+	3.2.1.22
43573	alpha-glucosidase	+	3.2.1.20
43573	alpha-mannosidase	-	3.2.1.24
43573	arginine dihydrolase	-	3.5.3.6
43573	beta-galactosidase	+	3.2.1.23
43573	beta-glucosidase	+	3.2.1.21
43573	beta-glucuronidase	-	3.2.1.31
43573	catalase	+	1.11.1.6
43573	cystine arylamidase	+	3.4.11.3
43573	cytochrome oxidase	+	1.9.3.1
43573	esterase (C 4)	+
43573	esterase Lipase (C 8)	+
43573	leucine arylamidase	+	3.4.11.1
43573	lipase (C 14)	-
43573	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43573	naphthol-AS-BI-phosphohydrolase	+
43573	trypsin	-	3.4.21.4
43573	urease	-	3.5.1.5
43573	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43573

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	42.1
C16:1ω5c	21.4
C16:0	10.6
C17:0 iso 3OH	4.9
C15:0 iso	4.2
C16:0 3OH	3.6
C15:0 iso 3OH	3.3
C13:0 iso	2.6
C14:0	1
C15:0 anteiso	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Engineered product
#Engineered	#Laboratory	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
43573	an air conditioning system that operated in a laboratory	Seoul	Republic of Korea	KOR	Asia
67770	Laboratory air conditioning system		Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
43573	Sphingomonas frigidaeris strain KER25-10 16S ribosomal RNA gene, partial sequence	KY873312

GC content

@ref	GC-content (mol%)	Method
43573	65.1	Thermal denaturation, fluorometry
67770	65.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas frigidaeris sp. nov., isolated from an air conditioning system.	Lee Y, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002221	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43573	Yunho Lee, Che Ok Jeon: Sphingomonas frigidaeris sp. nov., isolated from an air conditioning system. IJSEM 67: 3907 - 3912 2017 ( DOI 10.1099/ijsem.0.002221 , PubMed 28884675 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingomonas frigidaeris (KACC 19285, JCM 32053, KER25-10)

Name and taxonomic classification