Name: Paludihabitans psychrotolerans NC1253
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140789

Type strain:

Species: Paludihabitans psychrotolerans

Strain Designation: NC1253

Culture col. no.: KCTC 15582, DSM 104738

Strain history: <- Yumei Dai, Chengdu Institute of Biology, Chinese Academy of Sciences

NCBI tax ID(s): 2038680 (species)

SI-ID 405356

DSM 104738

Section

Paludihabitans psychrotolerans NC1253 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from Zoige wetland soil.

Gram-positive
rod-shaped
spore-forming
anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Paludihabitans*
	Species	**Paludihabitans psychrotolerans**
	Full Scientific Name (LPSN)	Paludihabitans psychrotolerans (Li et al. 2017) Deshmukh and Oren 2023

Synonym

Paludicola psychrotolerans

Information on morphological and physiological properties Morphology

[Ref.: #43567]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #43567]	Cell length	1-3 µm

[Ref.: #43567]	Cell width	0.3 µm

[Ref.: #43567]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43567]	Colony color	White
[Ref.: #43567]	Cultivation medium used	MS agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43567]

Culture medium

MS agar

[Ref.: #43567]

Culture medium growth

[Ref.: #64911]

Culture medium

MINERAL SALT MEDIUM WITH COLLOIDAL CHITIN (DSMZ Medium 1681)

[Ref.: #64911]

Culture medium growth

[Ref.: #64911]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64911]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43567]	growth	4-35 °C
[Ref.: #43567]	optimum	25-30 °C
[Ref.: #64911]	growth	28 °C
[Ref.: #67771]	growth	25-30 °C

[Ref.: #43567]	Temperature range	mesophilic
[Ref.: #64911]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43567]			optimum	7.5-8
[Ref.: #43567]			growth	6-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43567]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #43567]	Type of spore	endospore
[Ref.: #43567]	Ability of spore formation	yes
[Ref.: #67771]	Type of spore	spore
[Ref.: #67771]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43567]		NaCl		growth	0-2	%(w/v)
[Ref.: #43567]		NaCl		optimum	0-0.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43567]	6-O-alpha-D-glucopyranosyl-D-gluconic acid	-	growth
[Ref.: #43567]	casein hydrolysate	-	growth
[Ref.: #43567]	cellobiose ChEBI	-	growth
[Ref.: #43567]	chitin ChEBI	+	carbon source
[Ref.: #43567]	D-fucose ChEBI	-	growth
[Ref.: #43567]	D-galacturonic acid ChEBI	-	growth
[Ref.: #43567]	D-mannose ChEBI	-	growth
[Ref.: #43567]	glucose ChEBI	-	growth
[Ref.: #43567]	L-fucose ChEBI	-	growth
[Ref.: #43567]	L-rhamnose ChEBI	-	growth
[Ref.: #43567]	maltodextrin ChEBI	-	growth
[Ref.: #43567]	N-acetylglucosamine ChEBI	-	growth
[Ref.: #43567]	pyruvate ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43567]	Sample type/isolated from	Zoige wetland soil
[Ref.: #43567]	Geographic location (country and/or sea, region)	Qinghai-Tibetan Plateau
[Ref.: #43567]	Country	China
[Ref.: #43567]	Country ISO 3 Code	CHN
[Ref.: #43567]	Continent	Asia
[Ref.: #43567]	Geographic location	33.9330°/102.8660°

[Ref.: #64911]	Sample type/isolated from	wetland soil
[Ref.: #64911]	Geographic location (country and/or sea, region)	eastern edge of Qinghai-Tibetan Plateau, Zoige Wetland (33° 56' N, 102° 52' E)
[Ref.: #64911]	Country	China
[Ref.: #64911]	Country ISO 3 Code	CHN
[Ref.: #64911]	Continent	Asia
[Ref.: #64911]	Geographic location	33.9333°/102.8670°

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Zoige wetland, Chengdu Institute of Biology, Chinese Academy of Sciences(CAS)
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY777734 (>99% sequence identity) for Paludicola psychrotolerans subclade from Microbeatlas

Aquatic Samples	422
Soil Samples	139
Animal Samples	2078
Plant Samples	76
Total Samples	2715

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64911]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64911]	Paludicola psychrotolerans strain NC1253 16S ribosomal RNA gene, partial sequence	KY777734	1490	ENA	2038680 tax ID

[Ref.: #64911]	GC-content	35.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	35.4 mol%

Availability in culture collections External links

[Ref.: #64911]

Culture collection no.

KCTC 15582, DSM 104738

[Ref.: #96792]

SI-ID 405356

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paludicola psychrotolerans gen. nov., sp. nov., a novel psychrotolerant chitinolytic anaerobe of the family Ruminococcaceae.	Li Y, Zhang LL, Liu L, Tian YQ, Liu XF, Li WJ, Dai YM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002260	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43567

Yan Li, Ling-Li Zhang, Lan Liu, Yong-Qiang Tian, Xiao-Feng Liu, Wen-Jun Li, Yu-Mei Dai: Paludicola psychrotolerans gen. nov., sp. nov., a novel psychrotolerant chitinolytic anaerobe of the family Ruminococcaceae. IJSEM 67: 4100 - 4103 2017 ( DOI 10.1099/ijsem.0.002260 , PubMed 28901896 )

#64911

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104738

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96792

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405356.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paludicola psychrotolerans in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF