Name: Oryzisolibacter propanilivorax EPL6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140788

Type strain:

Species: Oryzisolibacter propanilivorax

Strain Designation: EPL6

Culture col. no.: LMG 28427, CECT 8927, CCUG 62476

NCBI tax ID(s): 1527607 (species)

SI-ID 412261

CCUG 62476

Special Collections

Section

Oryzisolibacter propanilivorax EPL6 is an aerobe, chemoorganotroph, Gram-negative bacterium that forms circular colonies and was isolated from a propanil and 3,4-DCA enrichment culture produced from rice paddy soil.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
chemoorganotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Oryzisolibacter*
	Species	**Oryzisolibacter propanilivorax**
	Full Scientific Name (LPSN)	Oryzisolibacter propanilivorax Vaz-Moreira et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43566]	Gram stain	negative

[Ref.: #43566]	Cell length	1.9 µm

[Ref.: #43566]	Cell width	0.6 µm

[Ref.: #43566]	Cell shape	rod-shaped

[Ref.: #43566]	Motility	yes

[Ref.: #43566]	Colony size	2 mm
[Ref.: #43566]	Colony color	ligh yellow
[Ref.: #43566]	Colony shape	circular
[Ref.: #43566]	Incubation period	2 days
[Ref.: #43566]	Cultivation medium used	LA plates

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43566]

Culture medium

LA plates

[Ref.: #43566]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43566]			growth	15-37 °C
[Ref.: #62852]			growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43566]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43566]	Oxygen tolerance	aerobe
[Ref.: #62852]	Oxygen tolerance	aerobe

[Ref.: #43566]

Nutrition type

chemoorganotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43566]		NaCl		growth	0.1-4	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43566]	adipate ChEBI	+	assimilation
[Ref.: #43566]	amygdalin ChEBI	-	assimilation
[Ref.: #43566]	amygdalin ChEBI	-	fermentation
[Ref.: #43566]	arabinose ChEBI	-	fermentation
[Ref.: #43566]	arbutin ChEBI	-	assimilation
[Ref.: #43566]	cellobiose ChEBI	-	assimilation
[Ref.: #43566]	citrate ChEBI	+	assimilation
[Ref.: #43566]	D-arabinose ChEBI	-	assimilation
[Ref.: #43566]	D-arabitol ChEBI	-	assimilation
[Ref.: #43566]	D-fructose ChEBI	-	assimilation
[Ref.: #43566]	D-fucose ChEBI	-	assimilation
[Ref.: #43566]	D-galactose ChEBI	-	assimilation
[Ref.: #43566]	D-lyxose ChEBI	-	assimilation
[Ref.: #43566]	D-mannitol ChEBI	-	assimilation
[Ref.: #43566]	D-mannose ChEBI	-	assimilation
[Ref.: #43566]	D-ribose ChEBI	-	assimilation
[Ref.: #43566]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43566]	D-tagatose ChEBI	-	assimilation
[Ref.: #43566]	D-xylose ChEBI	-	assimilation
[Ref.: #43566]	decanoate ChEBI	-	assimilation
[Ref.: #43566]	erythritol ChEBI	-	assimilation
[Ref.: #43566]	esculin ChEBI	-	assimilation
[Ref.: #43566]	esculin ChEBI	-	hydrolysis
[Ref.: #43566]	galactitol ChEBI	-	assimilation
[Ref.: #43566]	gentiobiose ChEBI	-	assimilation
[Ref.: #43566]	glucose ChEBI	-	assimilation
[Ref.: #43566]	glucose ChEBI	-	fermentation
[Ref.: #43566]	glycerol ChEBI	+	assimilation
[Ref.: #43566]	glycogen ChEBI	-	assimilation
[Ref.: #43566]	inulin ChEBI	-	assimilation
[Ref.: #43566]	L-arabinose ChEBI	-	assimilation
[Ref.: #43566]	L-arabitol ChEBI	-	assimilation
[Ref.: #43566]	L-fucose ChEBI	-	assimilation
[Ref.: #43566]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43566]	L-sorbose ChEBI	-	assimilation
[Ref.: #43566]	L-xylose ChEBI	-	assimilation
[Ref.: #43566]	lactose ChEBI	-	assimilation
[Ref.: #43566]	malate ChEBI	+	assimilation
[Ref.: #43566]	maltose ChEBI	-	assimilation
[Ref.: #43566]	mannose ChEBI	-	fermentation
[Ref.: #43566]	melezitose ChEBI	-	assimilation
[Ref.: #43566]	melibiose ChEBI	-	assimilation
[Ref.: #43566]	melibiose ChEBI	-	fermentation
[Ref.: #43566]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #43566]	methyl alpha-D-mannoside ChEBI	-	assimilation
[Ref.: #43566]	methyl beta-D-xylopyranoside ChEBI	-	assimilation
[Ref.: #43566]	myo-inositol ChEBI	-	assimilation
[Ref.: #43566]	myo-inositol ChEBI	-	fermentation
[Ref.: #43566]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43566]	nitrate ChEBI	+	reduction
[Ref.: #43566]	nitrite ChEBI	+	reduction
[Ref.: #43566]	phenylacetate ChEBI	-	assimilation
[Ref.: #43566]	potassium 2-dehydro-D-gluconate	-	assimilation
[Ref.: #43566]	potassium 5-dehydro-D-gluconate	-	assimilation
[Ref.: #43566]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43566]	raffinose ChEBI	-	assimilation
[Ref.: #43566]	rhamnose ChEBI	-	fermentation
[Ref.: #43566]	ribitol ChEBI	-	assimilation
[Ref.: #43566]	salicin ChEBI	-	assimilation
[Ref.: #43566]	sodium citrate ChEBI	+	assimilation
[Ref.: #43566]	sorbitol ChEBI	-	fermentation
[Ref.: #43566]	starch ChEBI	-	assimilation
[Ref.: #43566]	sucrose ChEBI	-	assimilation
[Ref.: #43566]	sucrose ChEBI	-	fermentation
[Ref.: #43566]	trehalose ChEBI	-	assimilation
[Ref.: #43566]	turanose ChEBI	-	assimilation
[Ref.: #43566]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43566]	acetoin ChEBI	yes
[Ref.: #43566]	hydrogen sulfide ChEBI	no
[Ref.: #43566]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43566]	acid phosphatase	-	3.1.3.2
[Ref.: #43566]	alkaline phosphatase	+/-	3.1.3.1
[Ref.: #43566]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43566]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43566]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43566]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43566]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43566]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43566]	beta-galactosidase	-	3.2.1.23
[Ref.: #43566]	beta-glucosidase	-	3.2.1.21
[Ref.: #43566]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43566]	catalase	+	1.11.1.6
[Ref.: #43566]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43566]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43566]	esterase (C 4)	+
[Ref.: #43566]	esterase Lipase (C 8)	+
[Ref.: #43566]	gelatinase	+/-
[Ref.: #43566]	leucine arylamidase	+	3.4.11.1
[Ref.: #43566]	lipase (C 14)	-
[Ref.: #43566]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43566]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43566]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43566]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43566]	trypsin	-	3.4.21.4
[Ref.: #43566]	tryptophan deaminase	+	4.1.99.1
[Ref.: #43566]	urease	-	3.5.1.5
[Ref.: #43566]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43566]	Sample type/isolated from	a propanil and 3,4-DCA enrichment culture produced from rice paddy soil
[Ref.: #43566]	Geographic location (country and/or sea, region)	Baixo Mondego
[Ref.: #43566]	Country	Portugal
[Ref.: #43566]	Country ISO 3 Code	PRT
[Ref.: #43566]	Continent	Europe
[Ref.: #43566]	Geographic location	40.1830°/-8.6830°
[Ref.: #43566]	Isolation date	2007

[Ref.: #62852]	Sample type/isolated from	Bioreactor degrading propanil herbicide
[Ref.: #62852]	Sampling date	2009-08-05
[Ref.: #62852]	Geographic location (country and/or sea, region)	Porto
[Ref.: #62852]	Country	Portugal
[Ref.: #62852]	Country ISO 3 Code	PRT
[Ref.: #62852]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LM653274 (>99% sequence identity) for Alicycliphilus from Microbeatlas

Aquatic Samples	40
Soil Samples
Animal Samples	25
Plant Samples
Total Samples	65

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43566]	Oryzisolibacter propanilivorax partial 16S rRNA gene, isolate EPL6	LM653274		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oryzisolibacter propanilivorax EPL6	GCA_900103645	contig	GenBank ENA	1527607 tax ID	*
[Ref.: #66792]	Oryzisolibacter propanilivorax EPL6	2671180222	draft	JGI IMG/M	1527607 tax ID	*

[Ref.: #43566]

GC-content

69.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43566]

Culture collection no.

LMG 28427, CECT 8927, CCUG 62476

[Ref.: #96791]

SI-ID 412261

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium.	Vaz-Moreira I, Narciso-da-Rocha C, Lopes AR, Carvalho G, Lobo-da-Cunha A, Whitman WB, Snauwaert C, Vandamme P, Manaia CM, Nunes OC	Int J Syst Evol Microbiol	10.1099/ijsem.0.002184	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43566

Ivone Vaz-Moreira, Carlos Narciso-da-Rocha, Ana Rita Lopes, Gilda Carvalho, Alexandre Lobo-da-Cunha, William B. Whitman, Cindy Snauwaert, Peter Vandamme, Celia M. Manaia, Olga C. Nunes: Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium. IJSEM 67: 3752 - 3758 2017 ( DOI 10.1099/ijsem.0.002184 , PubMed 28895512 )

#62852 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62476

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96791

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID412261.1 )

* These data were automatically processed and therefore are not curated

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