Name: Pandoraea terrae SE-S21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140630

Type strain:

Species: Pandoraea terrae

Strain Designation: SE-S21

Culture col. no.: JCM 30137, KACC 18127, LMG 30175

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; SE-S21.

NCBI tax ID(s): 1537710 (species)

Section

Pandoraea terrae SE-S21 is a facultative aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from forest soil.

colony-forming
Gram-negative
motile
rod-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Pandoraea*
	Species	**Pandoraea terrae**
	Full Scientific Name (LPSN)	Pandoraea terrae Jeong et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43158]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #43158]	Cell length	0.9-1.3 µm

[Ref.: #43158]	Cell width	0.4-0.6 µm

[Ref.: #43158]	Cell shape	rod-shaped

[Ref.: #43158]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.559

[Ref.: #43158]	Colony color	white
[Ref.: #43158]	Colony shape	circular
[Ref.: #43158]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

L agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

		Temperature
[Ref.: #43158]	optimum	30 °C
[Ref.: #43158]	growth	10-40 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #43158]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43158]			optimum	7.0-7.5
[Ref.: #43158]			growth	4.0-10.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

facultative aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43158]		NaCl		growth	0-4.0	%(w/v)
[Ref.: #43158]		NaCl		optimum	0-2.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43158]	adipate ChEBI	+	assimilation
[Ref.: #43158]	casein	-	hydrolysis
[Ref.: #43158]	citrate ChEBI	-	assimilation
[Ref.: #43158]	D-glucose ChEBI	+	assimilation
[Ref.: #43158]	D-mannitol ChEBI	-	assimilation
[Ref.: #43158]	D-mannose ChEBI	-	assimilation
[Ref.: #43158]	decanoate ChEBI	+	assimilation
[Ref.: #43158]	esculin ChEBI	-	hydrolysis
[Ref.: #43158]	gelatin ChEBI	-	hydrolysis
[Ref.: #43158]	L-arabinose ChEBI	-	assimilation
[Ref.: #43158]	malate ChEBI	+	assimilation
[Ref.: #43158]	maltose ChEBI	-	assimilation
[Ref.: #43158]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43158]	nitrate ChEBI	-	reduction
[Ref.: #43158]	phenylacetate ChEBI	+	assimilation
[Ref.: #43158]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43158]	starch ChEBI	-	hydrolysis
[Ref.: #43158]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43158]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43158]	tyrosine ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43158]		dinitrogen ChEBI	no
[Ref.: #43158]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43158]	acid phosphatase	+	3.1.3.2
[Ref.: #43158]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43158]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43158]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43158]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43158]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43158]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43158]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43158]	beta-galactosidase	-	3.2.1.23
[Ref.: #43158]	beta-glucosidase	-	3.2.1.21
[Ref.: #43158]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43158]	catalase	+	1.11.1.6
[Ref.: #43158]	cystine arylamidase	-	3.4.11.3
[Ref.: #43158]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43158]	esterase (C 4)	+
[Ref.: #43158]	esterase Lipase (C 8)	+
[Ref.: #43158]	leucine arylamidase	+	3.4.11.1
[Ref.: #43158]	lipase (C 14)	-
[Ref.: #43158]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43158]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43158]	trypsin	-	3.4.21.4
[Ref.: #43158]	urease	+	3.5.1.5
[Ref.: #43158]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43158]

Fatty acid	Percentage
cyclo-C17:0	31.2
C16:0	30.7
cyclo-C19:1ω8c	11.5
aldehyde-C12:0 / unknown	8.8
C16:0 3OH	4.8
C12:0	3
C16:1ω6c / C16:1ω7c	2
C18:1ω7c / C18:1ω6c	2
C12:0 2OH	1.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43158]	Sample type/isolated from	forest soil
[Ref.: #43158]	Geographic location (country and/or sea, region)	Jeju Island, South Korea
[Ref.: #43158]	Country	Republic of Korea
[Ref.: #43158]	Country ISO 3 Code	KOR
[Ref.: #43158]	Continent	Asia
[Ref.: #43158]	Geographic location	33.0000°/126.0000°

[Ref.: #67770]	Sample type/isolated from	Forest soil of Jeju Island in Korea
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43158]	16S rRNA gene sequences	KJ831094	1455	ENA	1537710 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pandoraea terrae LMG 30175	GCA_902459695	contig	GenBank	1537710 tax ID	*
[Ref.: #66792]	Pandoraea terrae strain LMG 30175	1537710.3	wgs	PATRIC	1537710 tax ID	*
[Ref.: #66792]	Pandoraea terrae LMG 30175	2901612924	draft	JGI IMG/M	1537710 tax ID	*

[Ref.: #43158]	GC-content	61 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	61 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pandoraea terrae strain LMG 30175 PATRIC: 1537710.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pandoraea terrae strain LMG 30175 PATRIC: 1537710.3
[Ref.: #69480]	motile	yes	88.398	yes
[Ref.: #69480]	gram-positive	no	98.65	yes
[Ref.: #69480]	anaerobic	no	99.142	yes
[Ref.: #69480]	aerobic	yes	91.508	no
[Ref.: #69480]	halophile	no	92.191	no
[Ref.: #69480]	spore-forming	no	95.465	no
[Ref.: #69480]	thermophile	no	99.472	yes
[Ref.: #69480]	glucose-util	yes	77.367	yes
[Ref.: #69480]	flagellated	no	64.067	no
[Ref.: #69480]	glucose-ferment	no	87.915	no

Availability in culture collections External links

[Ref.: #43158]

Culture collection no.

JCM 30137, KACC 18127, LMG 30175

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pandoraea terrae sp. nov., isolated from forest soil, and emended description of the genus Pandoraea Coenye et al. 2000.	Jeong SE, Lee HJ, Jia B, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.001229	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43158

Sang Eun Jeong, Hyo Jung Lee, Baolei Jia and Che Ok Jeon: Pandoraea terrae sp. nov., isolated from forest soil, and emended description of the genus Pandoraea Coenye et al. 2000. IJSEM 66: 3524 - 3530 2016 ( DOI 10.1099/ijsem.0.001229 , PubMed 27267599 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Pandoraea terrae strain LMG 30175

Pandoraea terrae strain LMG 30175

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