Name: Desulforamulus ferrireducens GSS09
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140524

Type strain:

Species: Desulforamulus ferrireducens

Strain Designation: GSS09

Culture col. no.: KCTC 15523, MCCC 1K01254

Strain history: <- Guiqin Yang, Univ. of Chinese Academy of Sciences

NCBI tax ID(s): 1833852 (species)

Section

Desulforamulus ferrireducens GSS09 is an obligate anaerobe, spore-forming, thermophilic bacterium that was isolated from composting demonstration plant.

Gram-positive
motile
rod-shaped
spore-forming
obligate anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Desulforamulus*
	Species	**Desulforamulus ferrireducens**
	Full Scientific Name (LPSN)	Desulforamulus ferrireducens (Yang et al. 2016) Watanabe et al. 2021

Synonym

Desulfotomaculum ferrireducens

Information on morphological and physiological properties Morphology

[Ref.: #43086]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43086]	Cell length	3.5-4.6 µm

[Ref.: #43086]	Cell width	0.8-1.1 µm

[Ref.: #43086]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43086]	Motility	yes
[Ref.: #67771]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %93.586

[Ref.: #43086]	Colony color	grey
[Ref.: #43086]	Incubation period	7 days
[Ref.: #43086]	Cultivation medium used	MSM agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43086]

Culture medium

MSM agar

[Ref.: #43086]

Culture medium growth

[Ref.: #43086]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43086]	optimum	50 °C
[Ref.: #43086]	growth	30-55 °C
[Ref.: #67771]	growth	50-55 °C

[Ref.: #43086]	Temperature range	thermophilic
[Ref.: #67771]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #43086]			optimum	7.5
[Ref.: #43086]			growth	6.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43086]	Oxygen tolerance	obligate anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.41

[Ref.: #43086]	Spore description	ellipsoidal, formed at subterminal or terminal position
[Ref.: #43086]	Type of spore	endospore
[Ref.: #43086]	Ability of spore formation	yes
[Ref.: #67771]	Type of spore	endospore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %98
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43086]		NaCl		growth	0-3	%(w/v)
[Ref.: #43086]		NaCl		optimum	1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43086]	acetate ChEBI	+	electron donor
[Ref.: #43086]	elemental sulfur ChEBI	-	electron acceptor
[Ref.: #43086]	ethanol ChEBI	+	electron donor
[Ref.: #43086]	ferrihydrite	+	electron acceptor
[Ref.: #43086]	formate ChEBI	+	electron donor
[Ref.: #43086]	fructose ChEBI	+	electron donor
[Ref.: #43086]	fructose ChEBI	+	fermentation
[Ref.: #43086]	fumarate ChEBI	-	electron donor
[Ref.: #43086]	glucose ChEBI	+	electron donor
[Ref.: #43086]	glycerol ChEBI	+	electron donor
[Ref.: #43086]	lactate ChEBI	+	electron donor
[Ref.: #43086]	lactose ChEBI	+	electron donor
[Ref.: #43086]	malate ChEBI	-	electron donor
[Ref.: #43086]	nitrate ChEBI	+	electron acceptor
[Ref.: #43086]	nitrite ChEBI	+	electron acceptor
[Ref.: #43086]	pyruvate ChEBI	+	electron donor
[Ref.: #43086]	pyruvate ChEBI	+	fermentation
[Ref.: #43086]	succinate ChEBI	-	electron donor
[Ref.: #43086]	sucrose ChEBI	+	electron donor
[Ref.: #43086]	sulfate ChEBI	+	electron acceptor
[Ref.: #43086]	sulfite ChEBI	+	electron acceptor
[Ref.: #43086]	thiosulfate ChEBI	+	electron acceptor
[Ref.: #43086]	xylose ChEBI	+	electron donor
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43086]

Fatty acid	Percentage
C16:0	32.9
C16:1ω7c / C16:1ω6c	13.8
C15:0 iso	6.8
iso-C17:1 l / anteiso-C17:1 B	6.2
C16:1ω9c	4.6
C17:0 iso	4.4
C14:0	3.7
C18:0	3.7
C17:1 iso ω9c / C16:0 10-methyl	3.6
C18:1ω7c / C18:1ω6c	2.7
C17:0	2.4
C15:0 anteiso	2
C17:0 anteiso	1.3
C17:1ω8c	1.2
C17:1ω6c	1.2
C16:0 iso	1.1
iso-C19:1 I	1.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	aminopropanol phosphate biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	vitamin B12 metabolism	85.29	29 of 34
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	purine metabolism	72.34	68 of 94
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	sulfate reduction	69.23	9 of 13
[Ref.: #66794]	nitrate assimilation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	heme metabolism	64.29	9 of 14
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	coenzyme M biosynthesis	60	6 of 10
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	alanine metabolism	58.62	17 of 29
[Ref.: #66794]	oxidative phosphorylation	57.14	52 of 91
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	citric acid cycle	57.14	8 of 14
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	CO2 fixation in Crenarchaeota	55.56	5 of 9
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	53.85	7 of 13
[Ref.: #66794]	tryptophan metabolism	52.63	20 of 38
[Ref.: #66794]	non-pathway related	52.63	20 of 38
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	cysteine metabolism	44.44	8 of 18
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	propionate fermentation	40	4 of 10
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	lipid metabolism	38.71	12 of 31
[Ref.: #66794]	urea cycle	38.46	5 of 13
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	degradation of pentoses	35.71	10 of 28
[Ref.: #66794]	glutathione metabolism	35.71	5 of 14
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	degradation of sugar alcohols	25	4 of 16
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	25	3 of 12
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43086]	Sample type/isolated from	composting demonstration plant
[Ref.: #43086]	Geographic location (country and/or sea, region)	Dongguan City, Guangdong Province
[Ref.: #43086]	Country	China
[Ref.: #43086]	Country ISO 3 Code	CHN
[Ref.: #43086]	Continent	Asia
[Ref.: #43086]	Geographic location	23.0000°/113.0000°
[Ref.: #43086]	Enrichment culture	mineral salts medium (MSM)
[Ref.: #43086]	Enrichment culture composition	0.6 g/l NaH2PO4, 0.25 g/l NH4Cl, 0.1 g/l KCl, 2.5 g/l NaHCO3, 10.0 ml/l vitamin stock solution, 10.0 ml/ mineral stock solution, pH 7.2, supplemented with 25 mM ferrihydrite and 10 mM acetate
[Ref.: #43086]	Enrichment culture temperature	50 ̊C

[Ref.: #67771]	Sample type/isolated from	From Guangdong Chinacomposting demonstration plant
[Ref.: #67771]	Geographic location (country and/or sea, region)	Dongguan City, Guangdong Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	23.0400°/113.7500°
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Engineered	#Industrial	#Plant (Factory)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU589293 (>99% sequence identity) for Desulfotomaculum ferrireducens subclade from Microbeatlas

Aquatic Samples	62
Soil Samples	79
Animal Samples	55
Plant Samples	113
Total Samples	309

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43086]	Desulfotomaculum ferrireducens strain GSS09 16S ribosomal RNA gene, partial sequence	KU589293	1537	GenBank	1833852 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfotomaculum ferrireducens strain GSS09	1833852.3	complete	PATRIC	1833852 tax ID	*
[Ref.: #66792]	Desulforamulus ferrireducens GSS09	GCA_002005145	complete	GenBank	1833852 tax ID	*

[Ref.: #43086]	GC-content	49.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	49.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulforamulus ferrireducens GSS09 NCBI: GCA_002005145.1
[Ref.: #69481]	spore-forming	yes	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfotomaculum ferrireducens strain GSS09 PATRIC: 1833852.3
[Ref.: #69480]	motile	yes	87.518	yes
[Ref.: #69480]	gram-positive	no	64.296	yes
[Ref.: #69480]	anaerobic	yes	99.285	no
[Ref.: #69480]	aerobic	no	95.262	yes
[Ref.: #69480]	halophile	no	93.76	yes
[Ref.: #69480]	spore-forming	yes	92.848	yes
[Ref.: #69480]	glucose-util	yes	79.407	no
[Ref.: #69480]	flagellated	no	81.626	no
[Ref.: #69480]	thermophile	yes	67.192	no
[Ref.: #69480]	glucose-ferment	no	82.979	no

Availability in culture collections External links

[Ref.: #43086]

Culture collection no.

KCTC 15523, MCCC 1K01254

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43086

Guiqin Yang, Junhui Guo, Li Zhuang, Yong Yuan, Shungui Zhou: Desulfotomaculum ferrireducens sp. nov., a moderately thermophilic sulfate-reducing and dissimilatory Fe(III)-reducing bacterium isolated from compost. IJSEM 66: 3022 - 3028 2016 ( DOI 10.1099/ijsem.0.001139 , PubMed 27153808 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Desulforamulus ferrireducens GSS09

Desulfotomaculum ferrireducens strain GSS09

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