Name: Mucilaginibacter pocheonensis KCTC 12641
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140514

Type strain:

Species: Mucilaginibacter pocheonensis

Culture col. no.: KCTC 12641, LMG 23495, Gsoil 032

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 398050 (species)

Section

Mucilaginibacter pocheonensis KCTC 12641 is an aerobe, heterotroph, thermophilic bacterium that forms circular colonies and was isolated from soil of a ginseng field.

colony-forming
Gram-negative
rod-shaped
aerobe
heterotroph
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter pocheonensis**
	Full Scientific Name (LPSN)	Mucilaginibacter pocheonensis Zhao et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43093]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43093]	Cell length	1.0-1.5 µm

[Ref.: #43093]	Cell width	0.4-0.5 µm

[Ref.: #43093]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43093]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43093]	Colony size	2-3 mm
[Ref.: #43093]	Colony color	pale pink
[Ref.: #43093]	Colony shape	circular
[Ref.: #43093]	Incubation period	2 days
[Ref.: #43093]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

nutritient agar (NA)

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Culture medium growth

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Culture medium

tryptic soy agar (TSA)

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #43093]	no	growth	45 °C
[Ref.: #43093]		optimum	37 °C
[Ref.: #43093]		growth	10-42 °C
[Ref.: #67771]		growth	30-37 °C

[Ref.: #43093]	Temperature range	thermophilic
[Ref.: #43093]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43093]			optimum	7
[Ref.: #43093]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43093]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

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Nutrition type

heterotroph

[Ref.: #43093]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43093]		NaCl		growth	1	%(w/v)

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Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43093]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43093]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43093]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #43093]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43093]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43093]	acetate ChEBI	-	assimilation
[Ref.: #43093]	adipate ChEBI	-	assimilation
[Ref.: #43093]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43093]	casein	-	hydrolysis
[Ref.: #43093]	citrate ChEBI	-	assimilation
[Ref.: #43093]	D-glucose ChEBI	+	assimilation
[Ref.: #43093]	D-mannitol ChEBI	+	assimilation
[Ref.: #43093]	D-mannose ChEBI	+	assimilation
[Ref.: #43093]	D-ribose ChEBI	+	assimilation
[Ref.: #43093]	D-sorbitol ChEBI	+	assimilation
[Ref.: #43093]	decanoate ChEBI	-	assimilation
[Ref.: #43093]	dna ChEBI	-	hydrolysis
[Ref.: #43093]	esculin ChEBI	+	hydrolysis
[Ref.: #43093]	gelatin ChEBI	+	hydrolysis
[Ref.: #43093]	gluconate ChEBI	-	assimilation
[Ref.: #43093]	glucose ChEBI	-	builds acid from
[Ref.: #43093]	glycogen ChEBI	-	assimilation
[Ref.: #43093]	itaconate ChEBI	+	assimilation
[Ref.: #43093]	L-alanine ChEBI	-	assimilation
[Ref.: #43093]	L-arabinose ChEBI	+	assimilation
[Ref.: #43093]	L-fucose ChEBI	+	assimilation
[Ref.: #43093]	L-histidine ChEBI	-	assimilation
[Ref.: #43093]	L-proline ChEBI	-	assimilation
[Ref.: #43093]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43093]	L-serine ChEBI	+	assimilation
[Ref.: #43093]	lactate ChEBI	-	assimilation
[Ref.: #43093]	malate ChEBI	-	assimilation
[Ref.: #43093]	malonate ChEBI	-	assimilation
[Ref.: #43093]	maltose ChEBI	+	assimilation
[Ref.: #43093]	melibiose ChEBI	-	assimilation
[Ref.: #43093]	myo-inositol ChEBI	+	assimilation
[Ref.: #43093]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43093]	nitrate ChEBI	-	reduction
[Ref.: #43093]	phenylacetate ChEBI	-	assimilation
[Ref.: #43093]	propionate ChEBI	-	assimilation
[Ref.: #43093]	salicin ChEBI	-	assimilation
[Ref.: #43093]	starch ChEBI	-	hydrolysis
[Ref.: #43093]	suberic acid ChEBI	-	assimilation
[Ref.: #43093]	sucrose ChEBI	+	assimilation
[Ref.: #43093]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43093]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43093]	valerate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43093]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43093]	acid phosphatase	+	3.1.3.2
[Ref.: #43093]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43093]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43093]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43093]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43093]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43093]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43093]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43093]	beta-galactosidase	+	3.2.1.23
[Ref.: #43093]	beta-glucosidase	+	3.2.1.21
[Ref.: #43093]	beta-glucuronidase	+	3.2.1.31
[Ref.: #43093]	catalase	+	1.11.1.6
[Ref.: #43093]	cystine arylamidase	+	3.4.11.3
[Ref.: #43093]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43093]	esterase (C 4)	+
[Ref.: #43093]	esterase Lipase (C 8)	+
[Ref.: #43093]	gelatinase	+
[Ref.: #43093]	leucine arylamidase	+	3.4.11.1
[Ref.: #43093]	lipase (C 14)	-
[Ref.: #43093]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43093]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43093]	trypsin	-	3.4.21.4
[Ref.: #43093]	urease	+	3.5.1.5
[Ref.: #43093]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C16:1ω6c / C16:1ω7c	36.5
C15:0 iso	24.1
C17:0 iso 3OH	18.7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43093]	Sample type/isolated from	soil of a ginseng field
[Ref.: #43093]	Geographic location (country and/or sea, region)	Pocheon Province
[Ref.: #43093]	Country	Republic of Korea
[Ref.: #43093]	Country ISO 3 Code	KOR
[Ref.: #43093]	Continent	Asia
[Ref.: #43093]	Enrichment culture	R2A agar
[Ref.: #43093]	Enrichment culture temperature	21 ̊C
[Ref.: #43093]	Isolation/enrichment procedure	standard dilution-plating technique

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	KAIST
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43093]	Sphingoterrabacterium pocheensis gene for 16S rRNA, partial sequence, strain: Gsoil 032	AB267718	1462	GenBank	398050 tax ID

[Ref.: #43093]	GC-content	44.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	44.4 mol%

Availability in culture collections External links

[Ref.: #43093]

Culture collection no.

KCTC 12641, LMG 23495, Gsoil 032

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter pocheonensis sp. nov., with ginsenoside-converting activity, isolated from soil of a ginseng-cultivating field.	Zhao Y, Lee HG, Kim SK, Yu H, Jin F, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.001069	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43093

Yan Zhao, Hyung-Gwan Lee, Soo-Ki Kim, Hongshan Yu, Fengxie Jin, Wan-Taek Im: Mucilaginibacter pocheonensis sp. nov., with ginsenoside-converting activity, isolated from soil of a ginseng-cultivating field. IJSEM 66: 2862 - 2868 2016 ( DOI 10.1099/ijsem.0.001069 , PubMed 27055089 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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