Name: Gelatiniphilus marinus GYP-24
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140515

Type strain:

Species: Gelatiniphilus marinus

Strain Designation: GYP-24

Culture col. no.: KCTC 42903, MCCC 1K01730

Strain history: <- Guanghua Wang, South China Sea institute of Oceanology, Chinese Academy of Science

NCBI tax ID(s): 1759464 (species)

Section

Gelatiniphilus marinus GYP-24 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from culture pond.

colony-forming
Gram-negative
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Gelatiniphilus*
	Species	**Gelatiniphilus marinus**
	Full Scientific Name (LPSN)	Gelatiniphilus marinus Tang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43094]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43094]	Cell length	1.1-3.4 µm

[Ref.: #43094]	Cell width	0.3-1.1 µm

[Ref.: #43094]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43094]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43094]	Colony color	yellow
[Ref.: #43094]	Colony shape	circular
[Ref.: #43094]	Cultivation medium used	marine ahar (MA)

[Ref.: #43094]	Pigment production	yes
[Ref.: #43094]	Pigment name	carotenoid pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43094]

Culture medium

marine ahar (MA)

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Culture medium growth

[Ref.: #43094]

Culture medium

MacConkey agar

[Ref.: #43094]

Culture medium growth

		Temperature
[Ref.: #43094]	optimum	30-33 °C
[Ref.: #43094]	growth	15-37 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #43094]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43094]			optimum	7.0-8.0
[Ref.: #43094]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43094]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43094]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43094]		NaCl		growth	0.5-4	%(w/v)
[Ref.: #43094]		NaCl		optimum	2-3	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43094]	(S)-lactate ChEBI	+	respiration
[Ref.: #43094]	2-hydroxybutyrate ChEBI	-	respiration
[Ref.: #43094]	2-oxoglutarate ChEBI	+	respiration
[Ref.: #43094]	4-hydroxyphenylacetic acid ChEBI	-	respiration
[Ref.: #43094]	acetate ChEBI	+	respiration
[Ref.: #43094]	acetoacetate ChEBI	-	respiration
[Ref.: #43094]	adipate ChEBI	+	assimilation
[Ref.: #43094]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #43094]	alpha-lactose ChEBI	+	respiration
[Ref.: #43094]	bromosuccinate ChEBI	+	respiration
[Ref.: #43094]	bromosuccinate ChEBI	-	respiration
[Ref.: #43094]	casein	-	hydrolysis
[Ref.: #43094]	cellobiose ChEBI	+	respiration
[Ref.: #43094]	cellulose ChEBI	-	hydrolysis
[Ref.: #43094]	chitin ChEBI	-	hydrolysis
[Ref.: #43094]	citrate ChEBI	+	respiration
[Ref.: #43094]	D-arabitol ChEBI	+	respiration
[Ref.: #43094]	D-aspartate ChEBI	-	respiration
[Ref.: #43094]	D-fructose ChEBI	+	respiration
[Ref.: #43094]	D-fructose 6-phosphate ChEBI	+	respiration
[Ref.: #43094]	D-fucose ChEBI	-	respiration
[Ref.: #43094]	D-galactose ChEBI	+	respiration
[Ref.: #43094]	D-galacturonic acid ChEBI	-	respiration
[Ref.: #43094]	D-gluconate ChEBI	+	respiration
[Ref.: #43094]	D-glucose ChEBI	+	assimilation
[Ref.: #43094]	D-glucose ChEBI	+	respiration
[Ref.: #43094]	D-glucuronate ChEBI	-	respiration
[Ref.: #43094]	D-malate ChEBI	+	respiration
[Ref.: #43094]	D-mannitol ChEBI	+	respiration
[Ref.: #43094]	D-mannose ChEBI	+	assimilation
[Ref.: #43094]	D-mannose ChEBI	+	respiration
[Ref.: #43094]	D-saccharate ChEBI	-	respiration
[Ref.: #43094]	D-sorbitol ChEBI	+	respiration
[Ref.: #43094]	D-sorbitol ChEBI	-	respiration
[Ref.: #43094]	decanoate ChEBI	+	assimilation
[Ref.: #43094]	dextrin ChEBI	+	respiration
[Ref.: #43094]	formate ChEBI	-	respiration
[Ref.: #43094]	galactarate ChEBI	-	respiration
[Ref.: #43094]	gamma-aminobutyric acid ChEBI	+	respiration
[Ref.: #43094]	gelatin ChEBI	+	hydrolysis
[Ref.: #43094]	gelatin ChEBI	+	respiration
[Ref.: #43094]	gentiobiose ChEBI	+	respiration
[Ref.: #43094]	glucuronamide ChEBI	-	respiration
[Ref.: #43094]	glycerol ChEBI	+	respiration
[Ref.: #43094]	glycine-proline ChEBI	+	respiration
[Ref.: #43094]	inosine ChEBI	+	respiration
[Ref.: #43094]	L-alanine ChEBI	+	respiration
[Ref.: #43094]	L-arabinose ChEBI	+	assimilation
[Ref.: #43094]	L-arginine ChEBI	+	respiration
[Ref.: #43094]	L-aspartate ChEBI	+	respiration
[Ref.: #43094]	L-fucose ChEBI	-	respiration
[Ref.: #43094]	L-galactonate ChEBI	-	respiration
[Ref.: #43094]	L-glutamate ChEBI	+	respiration
[Ref.: #43094]	L-histidine ChEBI	-	respiration
[Ref.: #43094]	L-malate ChEBI	+	respiration
[Ref.: #43094]	L-pyroglutamic acid ChEBI	+	respiration
[Ref.: #43094]	L-rhamnose ChEBI	-	respiration
[Ref.: #43094]	L-serine ChEBI	+	respiration
[Ref.: #43094]	malate ChEBI	+	assimilation
[Ref.: #43094]	maltose ChEBI	+	assimilation
[Ref.: #43094]	maltose ChEBI	+	respiration
[Ref.: #43094]	melibiose ChEBI	+	respiration
[Ref.: #43094]	methyl (R)-lactate ChEBI	-	respiration
[Ref.: #43094]	methyl beta-D-glucopyranoside ChEBI	-	respiration
[Ref.: #43094]	methyl D-glucoside ChEBI	+	respiration
[Ref.: #43094]	methyl pyruvate ChEBI	+	respiration
[Ref.: #43094]	myo-inositol ChEBI	+	respiration
[Ref.: #43094]	N-acetyl-beta-D-mannosamine ChEBI	-	respiration
[Ref.: #43094]	N-acetyl-D-mannosamine ChEBI	+	respiration
[Ref.: #43094]	N-acetylgalactosamine ChEBI	-	respiration
[Ref.: #43094]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43094]	n-acetylneuraminate ChEBI	-	respiration
[Ref.: #43094]	nitrate ChEBI	+	reduction
[Ref.: #43094]	pectin ChEBI	-	respiration
[Ref.: #43094]	phenylacetate ChEBI	+	assimilation
[Ref.: #43094]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43094]	propionate ChEBI	-	respiration
[Ref.: #43094]	quinate ChEBI	-	respiration
[Ref.: #43094]	raffinose ChEBI	+	respiration
[Ref.: #43094]	salicin ChEBI	+	respiration
[Ref.: #43094]	sodium citrate ChEBI	-	assimilation
[Ref.: #43094]	stachyose ChEBI	-	respiration
[Ref.: #43094]	starch ChEBI	-	hydrolysis
[Ref.: #43094]	sucrose ChEBI	+	respiration
[Ref.: #43094]	trehalose ChEBI	+	respiration
[Ref.: #43094]	turanose ChEBI	+	respiration
[Ref.: #43094]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43094]	tween 40 ChEBI	+	hydrolysis
[Ref.: #43094]	tween 40 ChEBI	+	respiration
[Ref.: #43094]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43094]	amoxicillin ChEBI	yes	10	µg (disc)
[Ref.: #43094]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43094]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43094]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43094]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43094]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #43094]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43094]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43094]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #43094]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43094]	streptomycin ChEBI				yes	10	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43094]		hydrogen sulfide ChEBI	no
[Ref.: #43094]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43094]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43094]	beta-galactosidase	+	3.2.1.23
[Ref.: #43094]	beta-glucosidase	+	3.2.1.21
[Ref.: #43094]	catalase	+	1.11.1.6
[Ref.: #43094]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43094]	gelatinase	+
[Ref.: #43094]	nitrate reductase	+	1.7.99.4
[Ref.: #43094]	urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43094]

Fatty acid	Percentage
C17:0 iso 3OH	15
C16:1ω7c / C16:1ω6c	11.1
C15:1 iso G	10.7
C15:0 iso	10.4
C15:0 iso 3OH	9.5
C16:0 iso 3OH	8.9
C15:0 anteiso	7.6
C17:0 2OH	5.1
iso-C17:1 l / anteiso-C17:1 B	3.6
C15:1 anteiso A	2.5
C15:0 2OH	2.2
C16:0	1.9
iso-C16:0 G	1.8
C16:1 iso G	1.8
iso-C16:0 G	1.6
C17:1ω9c / C16:0 10-methyl	1.4
C16:0 3OH	1.2
C18:0	1.1
C14:0 iso	1.1
C17:1 iso ω5c	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43094]	Sample type/isolated from	culture pond
[Ref.: #43094]	Geographic location (country and/or sea, region)	Sanya
[Ref.: #43094]	Country	China
[Ref.: #43094]	Country ISO 3 Code	CHN
[Ref.: #43094]	Continent	Asia
[Ref.: #43094]	Geographic location	18.0000°/109.0000°
[Ref.: #43094]	Enrichment culture	GYP
[Ref.: #43094]	Enrichment culture composition	tryptone 2 g, yeast extract 1 g, glycerol 3 ml, agar powder 18 g, aged seawater 1 l, pH 8.0
[Ref.: #43094]	Enrichment culture duration	10 days
[Ref.: #43094]	Enrichment culture temperature	25 ̊C
[Ref.: #43094]	Isolation/enrichment procedure	serial dilution strategy

[Ref.: #67771]	Sample type/isolated from	From the culture broth of a marine microalga, `Picochlorum` sp. 122
[Ref.: #67771]	Geographic location (country and/or sea, region)	Sanya
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	18.3000°/109.3200°
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	#Pond (small)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT727029 (>99% sequence identity) for Gelatiniphilus marinus subclade from Microbeatlas

Aquatic Samples	57
Soil Samples	5
Animal Samples	13
Plant Samples
Total Samples	75

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43094]	Gelatiniphilus marinus strain GYP-24 16S ribosomal RNA gene, partial sequence	KT727029	1487	GenBank	1759464 tax ID

[Ref.: #43094]	GC-content	36.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	36.9 mol%

Availability in culture collections External links

[Ref.: #43094]

Culture collection no.

KCTC 42903, MCCC 1K01730

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gelatiniphilus marinus gen. nov., sp. nov., a bacterium from the culture broth of a microalga, Picochlorum sp. 122, and emended description of the genus Hwangdonia.	Tang M, Tan L, Wu H, Dai S, Li T, Chen C, Li J, Fan J, Xiang W, Li X, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.001074	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43094

Mingxing Tang, Li Tan, Hualian Wu, Shikun Dai, Tao Li, Chenghao Chen, Jiaying Li, Jiewei Fan, Wenzhou Xiang, Xiang Li, Guanghua Wang: Gelatiniphilus marinus gen. nov., sp. nov., a bacterium from the culture broth of a microalga, Picochlorum sp. 122, and emended description of the genus Hwangdonia. IJSEM 66: 2893 - 2898 2016 ( DOI 10.1099/ijsem.0.001074 , PubMed 27064548 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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