Aquimarina aggregata (JCM 30824, MCCC 1K00698, RZW4-3-2)

Name: Aquimarina aggregata (JCM 30824, MCCC 1K00698, RZW4-3-2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140504

Type strain

Strain Designation RZW4-3-2

Culture col. no. JCM 30824 MCCC 1K00698 RZW4-3-2

NCBI tax ID(s) 1642818

Special Collections JCM Literature strains

History Y. Wang; Sch. of Life Sci. & Technol., Xin Xiang Med. Univ., China; RZW4-3-2.

Links

Aquimarina aggregata RZW4-3-2 is an obligate aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from seawater sample.

Gram-negative motile rod-shaped colony-forming obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 390895

JCM 30824

@ref 20215

Last LPSN update 2026-02-09 11:33:38

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Aquimarina

Species Aquimarina aggregata

Full scientific name Aquimarina aggregata Wang et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43125	negative	3.5-7.0 µm	0.3-0.5 µm	rod-shaped	gliding
125438						94
125438	negative					98.981

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43125	0.5-1.0 mm	yellow	circular	2-3 days	marineagar (MA)

Culture and growth conditions

Culture medium

@ref	Name	Composition
43125	marineagar (MA)
43125	marine broth (MB)	supplemented with 1 % (v/v) Tween 40
43125	marine broth (MB)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43125	positive	optimum	28	mesophilic
43125	positive	growth	4-42
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43125	positive	optimum	7
43125	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

43125

Oxygen toleranceobligate aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43125	NaCl	positive	growth	1-5 %(w/v)
43125	NaCl	positive	optimum	2-3 %(w/v)
43125	Marine salts		growth	0 %(w/v)

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43125	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
43125	58143 ChEBI	5-dehydro-D-gluconate	+	builds acid from
43125	30089 ChEBI	acetate	-	carbon source
43125	2509 ChEBI	agar	+	hydrolysis
43125	58187 ChEBI	alginate	+	carbon source
43125	27613 ChEBI	amygdalin	-	builds acid from
43125	22599 ChEBI	arabinose	-	builds acid from
43125	18305 ChEBI	arbutin	-	builds acid from
43125	16150 ChEBI	benzoate	-	carbon source
43125		casein	+	hydrolysis
43125	17057 ChEBI	cellobiose	-	builds acid from
43125	17057 ChEBI	cellobiose	-	carbon source
43125	17029 ChEBI	chitin	+	hydrolysis
43125	16947 ChEBI	citrate	-	carbon source
43125	15824 ChEBI	D-fructose	-	builds acid from
43125	12936 ChEBI	D-galactose	-	builds acid from
43125	12936 ChEBI	D-galactose	-	carbon source
43125	17634 ChEBI	D-glucose	-	builds acid from
43125	17634 ChEBI	D-glucose	-	carbon source
43125	62318 ChEBI	D-lyxose	-	builds acid from
43125	16899 ChEBI	D-mannitol	-	builds acid from
43125	16024 ChEBI	D-mannose	-	builds acid from
43125	16024 ChEBI	D-mannose	-	carbon source
43125	16988 ChEBI	D-ribose	-	builds acid from
43125	17924 ChEBI	D-sorbitol	-	builds acid from
43125	16443 ChEBI	D-tagatose	-	builds acid from
43125	65327 ChEBI	D-xylose	-	carbon source
43125	16449 ChEBI	dl-alanine	-	carbon source
43125	16991 ChEBI	dna	+	hydrolysis
43125	17113 ChEBI	erythritol	-	builds acid from
43125	4853 ChEBI	esculin	+	hydrolysis
43125	4853 ChEBI	esculin	-	builds acid from
43125	28757 ChEBI	fructose	-	carbon source
43125	33984 ChEBI	fucose	-	builds acid from
43125	16813 ChEBI	galactitol	-	builds acid from
43125	5291 ChEBI	gelatin	+	hydrolysis
43125	28066 ChEBI	gentiobiose	-	builds acid from
43125	17754 ChEBI	glycerol	-	builds acid from
43125	17754 ChEBI	glycerol	-	carbon source
43125	28087 ChEBI	glycogen	-	builds acid from
43125	15443 ChEBI	inulin	-	builds acid from
43125	18403 ChEBI	L-arabitol	-	builds acid from
43125	29985 ChEBI	L-glutamate	-	carbon source
43125	15971 ChEBI	L-histidine	-	carbon source
43125	15603 ChEBI	L-leucine	-	carbon source
43125	15729 ChEBI	L-ornithine	-	carbon source
43125	17295 ChEBI	L-phenylalanine	-	carbon source
43125	17203 ChEBI	L-proline	-	carbon source
43125	62345 ChEBI	L-rhamnose	-	builds acid from
43125	17266 ChEBI	L-sorbose	-	builds acid from
43125	17716 ChEBI	lactose	-	builds acid from
43125	17716 ChEBI	lactose	-	carbon source
43125	25094 ChEBI	lysine	-	carbon source
43125	17306 ChEBI	maltose	-	builds acid from
43125	17306 ChEBI	maltose	-	carbon source
43125	6731 ChEBI	melezitose	-	builds acid from
43125	28053 ChEBI	melibiose	-	builds acid from
43125	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
43125	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43125	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43125	17268 ChEBI	myo-inositol	-	builds acid from
43125	17268 ChEBI	myo-inositol	-	carbon source
43125	506227 ChEBI	N-acetylglucosamine	-	builds acid from
43125	16301 ChEBI	nitrite	-	reduction
43125	16634 ChEBI	raffinose	-	builds acid from
43125	15963 ChEBI	ribitol	-	builds acid from
43125	17814 ChEBI	salicin	-	builds acid from
43125	28017 ChEBI	starch	+	hydrolysis
43125	28017 ChEBI	starch	-	builds acid from
43125	17992 ChEBI	sucrose	-	builds acid from
43125	17992 ChEBI	sucrose	+	carbon source
43125	27082 ChEBI	trehalose	-	builds acid from
43125	32528 ChEBI	turanose	-	builds acid from
43125	53424 ChEBI	tween 20	+	hydrolysis
43125	53424 ChEBI	tween 20	-	carbon source
43125	53423 ChEBI	tween 40	+	hydrolysis
43125	53423 ChEBI	tween 40	+	carbon source
43125	53425 ChEBI	tween 60	+	hydrolysis
43125	53425 ChEBI	tween 60	+	carbon source
43125	53426 ChEBI	tween 80	+	hydrolysis
43125	53426 ChEBI	tween 80	+	carbon source
43125	16199 ChEBI	urea	-	hydrolysis
43125	17151 ChEBI	xylitol	-	builds acid from
43125	18222 ChEBI	xylose	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Group ID	Metabolite	Resistance conc.	Sensitivity conc.
43125	2637		amikacin	30 µg (disc)
43125	28971		ampicillin		10 µg (disc)
43125	3393		carbenicillin		100 µg (disc)
43125	474053		cefazolin		20 µg (disc)
43125	3493		cefoperazone		75 µg (disc)
43125	3508		ceftazidime	30 µg (disc)
43125	3534		cephalexin		30 µg (disc)
43125	3547		cephradine		30 µg (disc)
43125	17698		chloramphenicol		30 µg (disc)
43125	100241		ciprofloxacin		5 µg (disc)
43125	3745		clindamycin		2 µg (disc)
43125	50845		doxycycline	30 µg (disc)
43125	48923		erythromycin		15 µg (disc)
43125	5195		furazolidone		30 µg (disc)
43125	17833		gentamicin	10 µg (disc)
43125	6104		kanamycin	30 µg (disc)
43125	31845		midecamycin		30 µg (disc)
43125	50694		minocycline		30 µg (disc)
43125	7507		neomycin	30 µg (disc)
43125	100246		norfloxacin		10 µg (disc)
43125	7731		ofloxacin	5 µg (disc)
43125	7809		oxacillin	1 µg (disc)
43125	17334		penicillin		10 µg (disc)
43125	8232		piperacillin		100 µg (disc)
43125	8309		polymyxin b	300 µg (disc)
43125	9332	26	sulfamethoxazole	25 µg (disc)
43125	27902		tetracycline	30 µg (disc)
43125	45924	26	trimethoprim	25 µg (disc)
43125	28001		vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43125	16136 ChEBI	hydrogen sulfide
43125	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43125	acid phosphatase	+	3.1.3.2
43125	alkaline phosphatase	+	3.1.3.1
43125	alpha-chymotrypsin	+	3.4.21.1
43125	alpha-fucosidase	-	3.2.1.51
43125	alpha-galactosidase	-	3.2.1.22
43125	alpha-glucosidase	-	3.2.1.20
43125	alpha-mannosidase	-	3.2.1.24
43125	beta-galactosidase	-	3.2.1.23
43125	beta-glucosidase	-	3.2.1.21
43125	beta-glucuronidase	-	3.2.1.31
43125	catalase	+	1.11.1.6
43125	cystine arylamidase	-	3.4.11.3
43125	cytochrome oxidase	+	1.9.3.1
43125	esterase (C 4)	+
43125	esterase Lipase (C 8)	-
43125	leucine arylamidase	+	3.4.11.1
43125	lipase (C 14)	-
43125	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43125	naphthol-AS-BI-phosphohydrolase	-
43125	trypsin	-	3.4.21.4
43125	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	kanosamine biosynthesis II	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	octane oxidation	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	acetoin degradation	100	3 of 3
66794	starch degradation	100	10 of 10
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	glycine betaine biosynthesis	100	5 of 5
66794	aerobactin biosynthesis	100	1 of 1
66794	palmitate biosynthesis	95.45	21 of 22
66794	NAD metabolism	94.44	17 of 18
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	Entner Doudoroff pathway	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	ketogluconate metabolism	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	proline metabolism	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	vitamin K metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	tryptophan metabolism	78.95	30 of 38
66794	heme metabolism	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	purine metabolism	77.66	73 of 94
66794	leucine metabolism	76.92	10 of 13
66794	urea cycle	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	vitamin B12 metabolism	76.47	26 of 34
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	tyrosine metabolism	71.43	10 of 14
66794	lysine metabolism	71.43	30 of 42
66794	citric acid cycle	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	propionate fermentation	70	7 of 10
66794	alanine metabolism	68.97	20 of 29
66794	histidine metabolism	68.97	20 of 29
66794	pyrimidine metabolism	68.89	31 of 45
66794	degradation of sugar alcohols	68.75	11 of 16
66794	cysteine metabolism	66.67	12 of 18
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	flavin biosynthesis	66.67	10 of 15
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	d-xylose degradation	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	degradation of hexoses	61.11	11 of 18
66794	degradation of pentoses	60.71	17 of 28
66794	glycogen metabolism	60	3 of 5
66794	ascorbate metabolism	59.09	13 of 22
66794	methionine metabolism	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	carotenoid biosynthesis	54.55	12 of 22
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	degradation of sugar acids	52	13 of 25
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	ribulose monophosphate pathway	50	1 of 2
66794	isoprenoid biosynthesis	50	13 of 26
66794	ethanol fermentation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	toluene degradation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	glutathione metabolism	50	7 of 14
66794	lactate fermentation	50	2 of 4
66794	sulfate reduction	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	oxidative phosphorylation	43.96	40 of 91
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	lipoate biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	polyamine pathway	39.13	9 of 23
66794	carnitine metabolism	37.5	3 of 8
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	sulfoquinovose degradation	33.33	1 of 3
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	phenol degradation	30	6 of 20
66794	mevalonate metabolism	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	arachidonic acid metabolism	22.22	4 of 18

Fatty acid profile

Metadata FA analysis

@ref

43125

Fatty acid	Percentage
C17:0 iso 3OH	23.7
C15:0 iso	23
C15:1 iso G	12
C15:0 iso 3OH	7.7
C16:0	4.7
C16:1ω7c / C16:1ω6c	4.6
iso-C17:1 l / anteiso-C17:1 B	4.1
C16:0 10-methyl/iso-C17:1ω9c	3.8
C16:0 3OH	3.1
C16:0 iso 3OH	3
C13:0 iso	2.8
C16:0 iso	2.7
C18:0	2.3
C13:0 iso 3OH	2.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture temperature
43125	seawater sample	coastal region of the Yellow Sea	China	CHN	Asia	35	119 35/119	marine agar 2216 (MA; BD)	28
67770	Coastal seawater of the Yellow Sea		China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KR080699 (>99% sequence identity) for Aquimarina aggregata subclade from Microbeatlas

Aquatic Samples	379
Soil Samples
Animal Samples	63
Plant Samples	17
Total Samples	459

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
67770	ASM163274v1 assembly for Aquimarina aggregata RZW4-3-2	contig	GCA_001632745	1642818.3	1642818	56.92

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43125	Aquimarina aggregata strain RZW4-3-2 16S ribosomal RNA gene, partial sequence	KR080699	1483		1642818

GC content

@ref	GC-content (mol%)	Method
43125	32.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aquimarina aggregata RZW4-3-2
NCBI: GCA_001632745.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.98	yes
125438	anaerobic	anaerobicⓘ	no	97.79	yes
125438	aerobic	aerobicⓘ	yes	88.18	no
125438	spore-forming	spore-formingⓘ	no	87.46	no
125438	thermophilic	thermophileⓘ	no	96.43	yes
125438	flagellated	motile2+ⓘ	no	94.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquimarina aggregata sp. nov., isolated from seawater.	Wang Y, Ming H, Guo W, Chen H, Zhou C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001209	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43125	Yan Wang, Hong Ming, Weiyun Guo, Hongli Chen, Chenyan Zhou: Aquimarina aggregata sp. nov., isolated from seawater. IJSEM 66: 3406 - 3412 2016 ( DOI 10.1099/ijsem.0.001209 , PubMed 27259860 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aquimarina aggregata (JCM 30824, MCCC 1K00698, RZW4-3-2)

Name and taxonomic classification