Name: Flavisolibacter tropicus LCS9
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140505

Type strain:

Species: Flavisolibacter tropicus

Strain Designation: LCS9

Culture col. no.: KCTC 42070, JCM 19972

Strain history: <- Kim, Myung Kyum (Seoul Women's Univ.)

NCBI tax ID(s): 1492898 (species)

Special Collections

Section

Flavisolibacter tropicus LCS9 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil sample from tropic zone of Ecorium of the National Institute of Ecology.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Flavisolibacter*
	Species	**Flavisolibacter tropicus**
	Full Scientific Name (LPSN)	Flavisolibacter tropicus Lee et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43126]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %91.679

[Ref.: #43126]	Cell length	2.2-3.5 µm

[Ref.: #43126]	Cell width	0.3-0.5 µm

[Ref.: #43126]	Cell shape	rod-shaped

[Ref.: #43126]	Motility	no

[Ref.: #43126]	Colony color	deep yellow
[Ref.: #43126]	Incubation period	3 days
[Ref.: #43126]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43126]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43126]

Culture medium growth

[Ref.: #43126]

Culture medium

nutritient agar (NA)

[Ref.: #43126]

Culture medium growth

[Ref.: #43126]

Culture medium

tryptic soy agar (TSA)

[Ref.: #43126]

Culture medium growth

[Ref.: #43126]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43126]

Culture medium growth

		Temperature
[Ref.: #43126]	optimum	25 °C
[Ref.: #43126]	growth	10-37 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #43126]			optimum	7
[Ref.: #43126]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43126]		NaCl		growth	0-0.5	%(w/v)
[Ref.: #43126]		NaCl		optimum	0	%(w/v)

[Ref.: #43126]	Observation	weakly resistant to gamma radiation (100 kCi)
[Ref.: #67770]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43126]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43126]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43126]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43126]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43126]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43126]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #43126]	acetate ChEBI	-	assimilation
[Ref.: #43126]	adipate ChEBI	+	assimilation
[Ref.: #43126]	amygdalin ChEBI	-	builds acid from
[Ref.: #43126]	arbutin ChEBI	-	builds acid from
[Ref.: #43126]	cellobiose ChEBI	+	builds acid from
[Ref.: #43126]	citrate ChEBI	-	assimilation
[Ref.: #43126]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43126]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43126]	D-fructose ChEBI	-	builds acid from
[Ref.: #43126]	D-fucose ChEBI	-	builds acid from
[Ref.: #43126]	D-galactose ChEBI	+	builds acid from
[Ref.: #43126]	D-glucose ChEBI	+	carbon source
[Ref.: #43126]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43126]	D-mannitol ChEBI	-	assimilation
[Ref.: #43126]	D-mannose ChEBI	+	carbon source
[Ref.: #43126]	D-mannose ChEBI	+	builds acid from
[Ref.: #43126]	D-ribose ChEBI	-	assimilation
[Ref.: #43126]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43126]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43126]	D-xylose ChEBI	-	builds acid from
[Ref.: #43126]	decanoate ChEBI	-	assimilation
[Ref.: #43126]	erythritol ChEBI	-	builds acid from
[Ref.: #43126]	esculin ChEBI	+	hydrolysis
[Ref.: #43126]	esculin ChEBI	+	builds acid from
[Ref.: #43126]	galactitol ChEBI	-	builds acid from
[Ref.: #43126]	gelatin ChEBI	+	hydrolysis
[Ref.: #43126]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43126]	gluconate ChEBI	-	assimilation
[Ref.: #43126]	gluconate ChEBI	-	builds acid from
[Ref.: #43126]	glucose ChEBI	+	builds acid from
[Ref.: #43126]	glycerol ChEBI	-	builds acid from
[Ref.: #43126]	glycogen ChEBI	+	carbon source
[Ref.: #43126]	glycogen ChEBI	+	builds acid from
[Ref.: #43126]	inulin ChEBI	-	builds acid from
[Ref.: #43126]	itaconate ChEBI	-	assimilation
[Ref.: #43126]	L-alanine ChEBI	-	assimilation
[Ref.: #43126]	L-arabinose ChEBI	+	assimilation
[Ref.: #43126]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43126]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43126]	L-fucose ChEBI	-	assimilation
[Ref.: #43126]	L-fucose ChEBI	-	builds acid from
[Ref.: #43126]	L-histidine ChEBI	-	assimilation
[Ref.: #43126]	L-malate ChEBI	+	assimilation
[Ref.: #43126]	L-proline ChEBI	+	carbon source
[Ref.: #43126]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43126]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43126]	L-serine ChEBI	-	assimilation
[Ref.: #43126]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43126]	L-xylose ChEBI	-	builds acid from
[Ref.: #43126]	lactate ChEBI	-	assimilation
[Ref.: #43126]	lactose ChEBI	+	builds acid from
[Ref.: #43126]	malonate ChEBI	-	assimilation
[Ref.: #43126]	maltose ChEBI	+	carbon source
[Ref.: #43126]	maltose ChEBI	+	builds acid from
[Ref.: #43126]	mannitol ChEBI	-	builds acid from
[Ref.: #43126]	melezitose ChEBI	-	builds acid from
[Ref.: #43126]	melibiose ChEBI	-	assimilation
[Ref.: #43126]	melibiose ChEBI	+	builds acid from
[Ref.: #43126]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43126]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43126]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43126]	myo-inositol ChEBI	-	assimilation
[Ref.: #43126]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43126]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43126]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43126]	nitrate ChEBI	-	reduction
[Ref.: #43126]	phenylacetate ChEBI	-	assimilation
[Ref.: #43126]	propionate ChEBI	-	assimilation
[Ref.: #43126]	raffinose ChEBI	-	builds acid from
[Ref.: #43126]	ribitol ChEBI	-	builds acid from
[Ref.: #43126]	ribose ChEBI	-	builds acid from
[Ref.: #43126]	salicin ChEBI	-	assimilation
[Ref.: #43126]	salicin ChEBI	-	builds acid from
[Ref.: #43126]	sorbitol ChEBI	-	builds acid from
[Ref.: #43126]	starch ChEBI	+	builds acid from
[Ref.: #43126]	suberic acid ChEBI	-	assimilation
[Ref.: #43126]	sucrose ChEBI	+	assimilation
[Ref.: #43126]	sucrose ChEBI	+	builds acid from
[Ref.: #43126]	trehalose ChEBI	+	builds acid from
[Ref.: #43126]	turanose ChEBI	-	builds acid from
[Ref.: #43126]	valerate ChEBI	-	assimilation
[Ref.: #43126]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43126]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43126]	acid phosphatase	+	3.1.3.2
[Ref.: #43126]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43126]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43126]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43126]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43126]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43126]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43126]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43126]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #43126]	beta-glucosidase	-	3.2.1.21
[Ref.: #43126]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43126]	catalase	+	1.11.1.6
[Ref.: #43126]	cystine arylamidase	+	3.4.11.3
[Ref.: #43126]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43126]	esterase (C 4)	+
[Ref.: #43126]	esterase Lipase (C 8)	+
[Ref.: #43126]	gelatinase	+
[Ref.: #43126]	leucine arylamidase	+	3.4.11.1
[Ref.: #43126]	lipase (C 14)	-
[Ref.: #43126]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43126]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43126]	trypsin	+	3.4.21.4
[Ref.: #43126]	urease	-	3.5.1.5
[Ref.: #43126]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43126]

Fatty acid	Percentage
C15:0 iso	27.4
C17:0 iso 3OH	18.1
C16:1ω7c / C16:1ω6c	9
C15:1 iso G	8.3
C15:0 anteiso	6.4
C15:1 anteiso A	5.7
C16:0 iso	3.3
C15:0 iso 3OH	2.7
C17:1 iso ω9c / C16:0 10-methyl	2.5
C15:0 2OH	2.5
C16:0	2.1
C17:0 2OH	2.1
C17:1ω6c	1.8
C13:0 3-OH / iso-C15:1H	1.7
C17:0 iso	1.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	NAD metabolism	94.44	17 of 18
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	glutathione metabolism	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	d-xylose degradation	72.73	8 of 11
[Ref.: #66794]	glutamate and glutamine metabolism	71.43	20 of 28
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	purine metabolism	70.21	66 of 94
[Ref.: #66794]	isoprenoid biosynthesis	69.23	18 of 26
[Ref.: #66794]	lysine metabolism	69.05	29 of 42
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	tryptophan metabolism	65.79	25 of 38
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	degradation of sugar acids	64	16 of 25
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	vitamin K metabolism	60	3 of 5
[Ref.: #66794]	coenzyme M biosynthesis	60	6 of 10
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	heme metabolism	57.14	8 of 14
[Ref.: #66794]	carotenoid biosynthesis	54.55	12 of 22
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	53.85	7 of 13
[Ref.: #66794]	oxidative phosphorylation	50.55	46 of 91
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	arginine metabolism	50	12 of 24
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	4-hydroxyphenylacetate degradation	50	5 of 10
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	chlorophyll metabolism	44.44	8 of 18
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	phenol degradation	40	8 of 20
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	3-phenylpropionate degradation	33.33	5 of 15
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	vitamin B1 metabolism	30.77	4 of 13
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43126]	Sample type/isolated from	soil sample from tropic zone of Ecorium of the National Institute of Ecology
[Ref.: #43126]	Geographic location (country and/or sea, region)	Seocheon
[Ref.: #43126]	Country	Republic of Korea
[Ref.: #43126]	Country ISO 3 Code	KOR
[Ref.: #43126]	Continent	Asia
[Ref.: #43126]	Geographic location	36.0000°/126.0000°
[Ref.: #43126]	Enrichment culture	R2A agar
[Ref.: #43126]	Enrichment culture duration	1 week
[Ref.: #43126]	Enrichment culture temperature	25 ̊C
[Ref.: #43126]	Isolation/enrichment procedure	serial dilution plating method

[Ref.: #67770]	Sample type/isolated from	Soil at the tropical zone within the Ecorium of the National Institute of Ecology
[Ref.: #67770]	Geographic location (country and/or sea, region)	Seocheon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ461518 (>99% sequence identity) for Flavisolibacter tropicus subclade from Microbeatlas

Aquatic Samples	1076
Soil Samples	3590
Animal Samples	216
Plant Samples	342
Total Samples	5224

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43126]	Flavisolibacter tropicus strain LCS9 16S ribosomal RNA gene, partial sequence	KJ461518	1439	GenBank ENA	1492898 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavisolibacter tropicus LCS9	GCA_001644645	complete	GenBank ENA	1492898 tax ID	*
[Ref.: #66792]	Flavisolibacter tropicus LCS9	2758568004	complete	JGI IMG/M	1492898 tax ID	*
[Ref.: #66792]	Flavisolibacter tropicus LCS9	2602042012	draft	JGI IMG/M	1492898 tax ID	*

[Ref.: #67770]

GC-content

39.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavisolibacter tropicus LCS9 NCBI: GCA_001644645.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavisolibacter tropicus LCS9 NCBI: GCA_001644645.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	91.679	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.63	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.72	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.19	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.952	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.25	yes

Availability in culture collections External links

[Ref.: #43126]

Culture collection no.

KCTC 42070, JCM 19972

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavisolibacter tropicus sp. nov., isolated from tropical soil.	Lee JJ, Kang MS, Kim GS, Lee CS, Lim S, Lee J, Roh SH, Kang H, Ha JM, Bae S, Jung HY, Kim MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.001207	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43126

Jae-Jin Lee, Myung-Suk Kang, Gyung Soon Kim, Chang Soek Lee, Sangyong Lim, Jidam Lee, Si Hyeon Roh, Hyerin Kang, Jung Min Ha, Sojung Bae, Hee-Young Jung, Myung Kyum Kim: Flavisolibacter tropicus sp. nov., isolated from tropical soil. IJSEM 66: 3413 - 3419 2016 ( DOI 10.1099/ijsem.0.001207 , PubMed 27259556 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Flavisolibacter tropicus in external resources:
SILVA
BRENDA
PANGAEA
GBIF