Name: Lysobacter solanacearum T20R-70
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140463

Type strain:

Species: Lysobacter solanacearum

Strain Designation: T20R-70

Culture col. no.: KACC 18656, NBRC 111881

NCBI tax ID(s): 1929097 (species)

Section

Lysobacter solanacearum T20R-70 is an aerobe, mesophilic, Gram-negative bacterium that forms irregular colonies and was isolated from soil of rhizosphere of a tomato plant.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Lysobacter*
	Species	**Lysobacter solanacearum**
	Full Scientific Name (LPSN)	Lysobacter solanacearum Kim et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43191]	Gram stain	negative

[Ref.: #43191]	Cell length	1.6-2.6 µm

[Ref.: #43191]	Cell width	0.6-0.8 µm

[Ref.: #43191]	Cell shape	rod-shaped

[Ref.: #43191]	Motility	yes

[Ref.: #43191]	Colony color	yellow
[Ref.: #43191]	Colony shape	irregular
[Ref.: #43191]	Incubation period	2 days
[Ref.: #43191]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43191]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43191]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43191]			optimum	28-30 °C
[Ref.: #43191]			growth	10-40 °C

[Ref.: #43191]

Temperature range

mesophilic

	Kind of pH		pH
[Ref.: #43191]		optimum	7
[Ref.: #43191]		growth	7.0-8.0
[Ref.: #43191]	no	growth	6
[Ref.: #43191]	no	growth	9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43191]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43191]		NaCl		growth	0-1	%(w/v)
[Ref.: #43191]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43191]	amygdalin ChEBI	-	builds acid from
[Ref.: #43191]	arbutin ChEBI	-	builds acid from
[Ref.: #43191]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43191]	casein	+	hydrolysis
[Ref.: #43191]	cellobiose ChEBI	+	builds acid from
[Ref.: #43191]	chitin ChEBI	-	hydrolysis
[Ref.: #43191]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43191]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43191]	D-fructose ChEBI	+	builds acid from
[Ref.: #43191]	D-fucose ChEBI	-	builds acid from
[Ref.: #43191]	D-galactose ChEBI	+	builds acid from
[Ref.: #43191]	D-glucose ChEBI	+	builds acid from
[Ref.: #43191]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43191]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43191]	D-mannose ChEBI	-	builds acid from
[Ref.: #43191]	D-ribose ChEBI	+	builds acid from
[Ref.: #43191]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43191]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43191]	D-xylose ChEBI	+	builds acid from
[Ref.: #43191]	dna ChEBI	-	hydrolysis
[Ref.: #43191]	erythritol ChEBI	-	builds acid from
[Ref.: #43191]	esculin ChEBI	+	hydrolysis
[Ref.: #43191]	esculin ChEBI	+	builds acid from
[Ref.: #43191]	galactitol ChEBI	-	builds acid from
[Ref.: #43191]	gelatin ChEBI	+	hydrolysis
[Ref.: #43191]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43191]	glucose ChEBI	-	fermentation
[Ref.: #43191]	glycerol ChEBI	-	builds acid from
[Ref.: #43191]	glycogen ChEBI	+	builds acid from
[Ref.: #43191]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43191]	inulin ChEBI	-	builds acid from
[Ref.: #43191]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43191]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43191]	L-fucose ChEBI	-	builds acid from
[Ref.: #43191]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43191]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43191]	L-xylose ChEBI	-	builds acid from
[Ref.: #43191]	lactose ChEBI	-	builds acid from
[Ref.: #43191]	maltose ChEBI	+	builds acid from
[Ref.: #43191]	melezitose ChEBI	-	builds acid from
[Ref.: #43191]	melibiose ChEBI	+	builds acid from
[Ref.: #43191]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43191]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43191]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43191]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43191]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43191]	nitrate ChEBI	-	reduction
[Ref.: #43191]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #43191]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #43191]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43191]	raffinose ChEBI	+	builds acid from
[Ref.: #43191]	ribitol ChEBI	-	builds acid from
[Ref.: #43191]	salicin ChEBI	-	builds acid from
[Ref.: #43191]	starch ChEBI	+	hydrolysis
[Ref.: #43191]	starch ChEBI	+	builds acid from
[Ref.: #43191]	sucrose ChEBI	+	builds acid from
[Ref.: #43191]	trehalose ChEBI	+	builds acid from
[Ref.: #43191]	turanose ChEBI	-	builds acid from
[Ref.: #43191]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43191]	tyrosine ChEBI	-	hydrolysis
[Ref.: #43191]	xanthine ChEBI	-	hydrolysis
[Ref.: #43191]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43191]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43191]	acid phosphatase	+	3.1.3.2
[Ref.: #43191]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43191]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43191]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43191]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43191]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43191]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43191]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43191]	beta-galactosidase	-	3.2.1.23
[Ref.: #43191]	beta-glucosidase	-	3.2.1.21
[Ref.: #43191]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43191]	catalase	+	1.11.1.6
[Ref.: #43191]	cystine arylamidase	-	3.4.11.3
[Ref.: #43191]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43191]	esterase (C 4)	+
[Ref.: #43191]	esterase Lipase (C 8)	+
[Ref.: #43191]	leucine arylamidase	+	3.4.11.1
[Ref.: #43191]	lipase (C 14)	-
[Ref.: #43191]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43191]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43191]	trypsin	+	3.4.21.4
[Ref.: #43191]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43191]	Sample type/isolated from	soil of rhizosphere of a tomato plant
[Ref.: #43191]	Geographic location (country and/or sea, region)	Yecheon-gun, Gyeongsangbuk-do
[Ref.: #43191]	Country	Republic of Korea
[Ref.: #43191]	Country ISO 3 Code	KOR
[Ref.: #43191]	Continent	Asia
[Ref.: #43191]	Geographic location	36.0000°/128.0000°
[Ref.: #43191]	Enrichment culture	R2A agar medium (BD)
[Ref.: #43191]	Enrichment culture temperature	28 ̊C
[Ref.: #43191]	Isolation/enrichment procedure	serial dilution
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU379668 (>99% sequence identity) for Lysobacter from Microbeatlas

Aquatic Samples	83
Soil Samples	652
Animal Samples	37
Plant Samples	50
Total Samples	822

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43191]	Lysobacter sp. strain T20R-70 16S ribosomal RNA gene, complete sequence	KU379668	1480	GenBank	1929097 tax ID

[Ref.: #43191]

GC-content

63 mol%

Thermal denaturation, fluorometry

Availability in culture collections External links

[Ref.: #43191]

Culture collection no.

KACC 18656, NBRC 111881

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter profundi sp. nov., isolated from freshwater sediment and reclassification of Lysobacter panaciterrae as Luteimonas panaciterrae comb. nov.	Jin CZ, Song X, Sung YJ, Jin FJ, Li T, Oh HM, Lee HG, Jin L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004253	2020	*
Phylogeny	Lysobacter solanacearum sp. nov., isolated from rhizosphere of tomato.	Kim SJ, Ahn JH, Weon HY, Joa JH, Hong SB, Seok SJ, Kim JS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.001729	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43191

Soo-Jin Kim, Jae-Hyung Ahn, Hang-Yeon Weon, Jae-Ho Joa, Seung-Beom Hong, Soon-Ja Seok, Jeong-Seon Kim, Soon-Wo Kwon: Lysobacter solanacearum sp. nov., isolated from rhizosphere of tomato. IJSEM 67: 1102 - 1106 2017 ( DOI 10.1099/ijsem.0.001729 , PubMed 27959787 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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