Endothiovibrio diazotrophicus (JCM 17961, ATCC BAA-1439, S-1)

Name: Endothiovibrio diazotrophicus (JCM 17961, ATCC BAA-1439, S-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140464

Type strain

Strain Designation S-1

Culture col. no. JCM 17961 ATCC BAA-1439 S-1

NCBI tax ID(s) 913829

Special Collections JCM Literature strains

History C. T. Lefèvre <-- D. A. Bazylinski S-1.

Links

Endothiovibrio diazotrophicus S-1 is a microaerophile, chemolithoautotroph, Gram-negative bacterium that was isolated from mud and water.

Gram-negative motile rod-shaped microaerophile chemolithoautotroph 16S sequence Bacteria

Name and taxonomic classification

SI-ID 286190

ATCC BAA-1439,JCM 17961

@ref 20215

Last LPSN update 2026-02-09 11:33:37

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Chromatiales

Family Thioalkalispiraceae

Genus Endothiovibrio

Species Endothiovibrio diazotrophicus

Full scientific name Endothiovibrio diazotrophicus Bazylinski et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
43181	negative	3.8-6.0 µm	1.0-1.4 µm	rod-shaped		monotrichous, polar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
43181	semi-solid growth medium		0.2 ml 0.2 % aqueous resazurin, 10.0 ml 25 % Na2S2O3x5H2O, 0.25 g NH4Cl, 2.0 ml neutralized 0.43 M cysteinexHClxH2O, 2.67 ml 0.8 M NaHCO3, 5 ml modified Wolfe’s mineral elixir, 0.5 ml vitamin solution, 2.0 g Agar Noble (all per litre artificial sea water)

Culture temp

@ref	Growth	Type	Temperature (°C)
43181	positive	optimum	28
43181	positive	growth	5-37
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH
43181	positive	growth	5.2-8.0

Physiology and metabolism

Oxygen tolerance

43181

Oxygen tolerancemicroaerophile

Nutrition type

43181

Typechemolithoautotroph

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43181	NaCl	positive	maximum	0 %(w/v)
43181	Marine salts	positive	growth	10-100 %
43181	Marine salts	positive	minimum	10 %

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43181	16526 ChEBI	carbon dioxide	+	carbon source
43181	17997 ChEBI	dinitrogen	+	nitrogen source
43181	15379 ChEBI	dioxygen	+	electron acceptor
43181	15138 ChEBI	sulfide	+	electron donor
43181	16094 ChEBI	thiosulfate	+	electron donor

Enzymes

@ref	Value	Activity	Ec
43181	catalase	-	1.11.1.6
43181	cytochrome oxidase	-	1.9.3.1
43181	nitrogenase	+	1.18.6.1

Fatty acid profile

Metadata FA analysis

@ref

43181

Fatty acid	Percentage
C16:1ω7c	37
C16:0	30
C18:1ω7c	22
C18:0	5
C18:2ω6,9c	1.3
C18:1ω5c	1.2
C17:0	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture
43181	mud and water	brackish School Street Marsh, Woods Hole, Massachusetts	USA	USA	North America	sulfide-O 2 concentration gradient media
67770	Coastal salt marsh in Massachusetts		USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence HQ379738 (>99% sequence identity) for Endothiovibrio diazotrophicus subclade from Microbeatlas

Aquatic Samples	753
Soil Samples	146
Animal Samples	84
Plant Samples	10
Total Samples	993

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43181	Endothiovibrio diazotrophicus strain S-1 16S ribosomal RNA gene, partial sequence	HQ379738	1530		913829

GC content

@ref	GC-content (mol%)	Method
43181	67.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Endothiovibrio diazotrophicus gen. nov., sp. nov., a novel nitrogen-fixing, sulfur-oxidizing gammaproteobacterium isolated from a salt marsh.	Bazylinski DA, Morillo V, Lefevre CT, Viloria N, Dubbels BL, Williams TJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001743	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43181	Dennis A. Bazylinski, Viviana Morillo, Christopher T. Lefevre, Nathan Viloria, Bradley L. Dubbels, Timothy J. Williams: Endothiovibrio diazotrophicus gen. nov., sp. nov., a novel nitrogen-fixing, sulfur-oxidizing gammaproteobacterium isolated from a salt marsh. IJSEM 67: 1491 - 1498 2017 ( DOI 10.1099/ijsem.0.001743 , PubMed 27983471 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Endothiovibrio diazotrophicus (JCM 17961, ATCC BAA-1439, S-1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Halophily

Observation

Metabolite utilization

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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