Name: Endothiovibrio diazotrophicus S-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140464

Type strain:

Species: Endothiovibrio diazotrophicus

Strain Designation: S-1

Culture col. no.: JCM 17961, ATCC BAA-1439

Strain history: C. T. Lefèvre <-- D. A. Bazylinski S-1.

NCBI tax ID(s): 913829 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Endothiovibrio diazotrophicus S-1 is a microaerophile, chemolithoautotroph, mesophilic bacterium that was isolated from mud and water.

Gram-negative
motile
rod-shaped
chemolithoautotroph
mesophilic
microaerophile
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Thioalkalispiraceae*
	Genus	*Endothiovibrio*
	Species	**Endothiovibrio diazotrophicus**
	Full Scientific Name (LPSN)	Endothiovibrio diazotrophicus Bazylinski et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43181]	Gram stain	negative

[Ref.: #43181]	Cell length	3.8-6.0 µm

[Ref.: #43181]	Cell width	1.0-1.4 µm

[Ref.: #43181]	Cell shape	rod-shaped

[Ref.: #43181]	Motility	yes

[Ref.: #43181]	Flagellum arrangement	monotrichous, polar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43181]

Culture medium

semi-solid growth medium

[Ref.: #43181]

Culture medium growth

[Ref.: #43181]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43181]	optimum	28 °C
[Ref.: #43181]	growth	5-37 °C
[Ref.: #67770]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #43181]			growth	5.2-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43181]

Oxygen tolerance

microaerophile

[Ref.: #43181]

Nutrition type

chemolithoautotroph

	Salt		Salt conc.
[Ref.: #43181]	NaCl	maximum	0	%(w/v)
[Ref.: #43181]	Marine salts	growth	10-100	%
[Ref.: #43181]	Marine salts	minimum	10	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43181]	carbon dioxide ChEBI	+	carbon source
[Ref.: #43181]	dinitrogen ChEBI	+	nitrogen source
[Ref.: #43181]	dioxygen ChEBI	+	electron acceptor
[Ref.: #43181]	sulfide ChEBI	+	electron donor
[Ref.: #43181]	thiosulfate ChEBI	+	electron donor

	Enzyme	Enzyme activity	EC number
[Ref.: #43181]	catalase	-	1.11.1.6
[Ref.: #43181]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43181]	nitrogenase	+	1.18.6.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43181]

Fatty acid	Percentage
C16:1ω7c	37
C16:0	30
C18:1ω7c	22
C18:0	5
C18:2ω6,9c	1.3
C18:1ω5c	1.2
C17:0	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43181]	Sample type/isolated from	mud and water
[Ref.: #43181]	Geographic location (country and/or sea, region)	brackish School Street Marsh, Woods Hole, Massachusetts
[Ref.: #43181]	Country	USA
[Ref.: #43181]	Country ISO 3 Code	USA
[Ref.: #43181]	Continent	North America
[Ref.: #43181]	Enrichment culture	sulfide-O 2 concentration gradient media

[Ref.: #67770]	Sample type/isolated from	Coastal salt marsh in Massachusetts
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ379738 (>99% sequence identity) for Endothiovibrio diazotrophicus subclade from Microbeatlas

Aquatic Samples	753
Soil Samples	146
Animal Samples	84
Plant Samples	10
Total Samples	993

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43181]	Endothiovibrio diazotrophicus strain S-1 16S ribosomal RNA gene, partial sequence	HQ379738	1530	GenBank ENA	913829 tax ID

[Ref.: #43181]

GC-content

67.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43181]

Culture collection no.

JCM 17961, ATCC BAA-1439

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Endothiovibrio diazotrophicus gen. nov., sp. nov., a novel nitrogen-fixing, sulfur-oxidizing gammaproteobacterium isolated from a salt marsh.	Bazylinski DA, Morillo V, Lefevre CT, Viloria N, Dubbels BL, Williams TJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001743	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43181

Dennis A. Bazylinski, Viviana Morillo, Christopher T. Lefevre, Nathan Viloria, Bradley L. Dubbels, Timothy J. Williams: Endothiovibrio diazotrophicus gen. nov., sp. nov., a novel nitrogen-fixing, sulfur-oxidizing gammaproteobacterium isolated from a salt marsh. IJSEM 67: 1491 - 1498 2017 ( DOI 10.1099/ijsem.0.001743 , PubMed 27983471 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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