Flavimobilis soli (DSM 21574, JCM 14841, KCTC 13155)

Name: Flavimobilis soli (DSM 21574, JCM 14841, KCTC 13155)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14043

Type strain

Culture col. no. DSM 21574 JCM 14841 KCTC 13155 DCY 22

NCBI tax ID(s) 442709

Special Collections DSMZ JCM KCTC Literature strains

History <- JCM <- D.-C. Yang; DCY22 D.-C. Yang DCY22. <- DC Yang, Kyunghee Univ.

Links

Flavimobilis soli DSM 21574 is an aerobe, Gram-positive, motile bacterium that was isolated from soil of a ginseng field.

Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309191

LMG 24127,JCM 14841,KCTC 13155,DSM 21574

@ref 20215

Last LPSN update 2026-02-09 11:21:18

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Jonesiaceae

Genus Flavimobilis

Species Flavimobilis soli

Full scientific name Flavimobilis soli (Kim et al. 2008) Nouioui et al. 2018

Synonyms (1)

Sanguibacter soli

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
32376	positive	rod-shaped
67771	positive
125438	positive		91.725
125439	positive		99.7

Pigmentation

32376

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15816	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15816	positive	growth	28
32376	positive	growth	30-37
32376	positive	optimum	37
67770	positive	growth	28
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
32376	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32376	aerobe
67771	aerobe
125439	obligate aerobe	96.3

Observation

@ref	Observation
67770	quinones: MK-9
67771	quinones: MK-9(H4), MK-8(H4)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32376	30089 ChEBI	acetate	+	carbon source
32376	22599 ChEBI	arabinose	+	carbon source
32376	17234 ChEBI	glucose	+	carbon source
32376	28087 ChEBI	glycogen	+	carbon source
32376	17306 ChEBI	maltose	+	carbon source
32376	37684 ChEBI	mannose	+	carbon source
32376	17814 ChEBI	salicin	+	carbon source
32376	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32376	acid phosphatase	+	3.1.3.2
32376	alkaline phosphatase	+	3.1.3.1
32376	catalase	+	1.11.1.6
32376	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	glycogen metabolism	100	5 of 5
66794	lipoate biosynthesis	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	cardiolipin biosynthesis	100	7 of 7
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	heme metabolism	92.86	13 of 14
66794	threonine metabolism	90	9 of 10
66794	starch degradation	90	9 of 10
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	pentose phosphate pathway	81.82	9 of 11
66794	flavin biosynthesis	80	12 of 15
66794	serine metabolism	77.78	7 of 9
66794	allantoin degradation	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	phenylalanine metabolism	76.92	10 of 13
66794	purine metabolism	76.6	72 of 94
66794	glycolysis	76.47	13 of 17
66794	vitamin E metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	isoleucine metabolism	75	6 of 8
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	Entner Doudoroff pathway	70	7 of 10
66794	myo-inositol biosynthesis	70	7 of 10
66794	pyrimidine metabolism	68.89	31 of 45
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	non-pathway related	65.79	25 of 38
66794	alanine metabolism	65.52	19 of 29
66794	citric acid cycle	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	vitamin B1 metabolism	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	oxidative phosphorylation	61.54	56 of 91
66794	degradation of sugar acids	60	15 of 25
66794	factor 420 biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	methionine metabolism	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	mevalonate metabolism	57.14	4 of 7
66794	degradation of pentoses	57.14	16 of 28
66794	cysteine metabolism	55.56	10 of 18
66794	histidine metabolism	55.17	16 of 29
66794	lipid metabolism	54.84	17 of 31
66794	leucine metabolism	53.85	7 of 13
66794	propionate fermentation	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	butanoate fermentation	50	2 of 4
66794	arginine metabolism	50	12 of 24
66794	phenylmercury acetate degradation	50	1 of 2
66794	tyrosine metabolism	50	7 of 14
66794	tryptophan metabolism	50	19 of 38
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lysine metabolism	47.62	20 of 42
66794	vitamin B6 metabolism	45.45	5 of 11
66794	lipid A biosynthesis	44.44	4 of 9
66794	degradation of hexoses	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	propanol degradation	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	carotenoid biosynthesis	40.91	9 of 22
66794	arachidonate biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	urea cycle	38.46	5 of 13
66794	glutathione metabolism	35.71	5 of 14
66794	cyanate degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	sulfate reduction	30.77	4 of 13
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	arachidonic acid metabolism	22.22	4 of 18
66794	chlorophyll metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
15816	soil of a ginseng field	Republic of Korea	KOR	Asia
67770	Soil of a ginseng field	Republic of Korea	KOR	Asia
67771	From soil	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF547937 (>99% sequence identity) for Micrococcales from Microbeatlas

Aquatic Samples	1949
Soil Samples	268
Animal Samples	472
Plant Samples	51
Total Samples	2740

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15816	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM256402v1 assembly for Flavimobilis soli DSM 21574	contig	GCA_002564025	442709.3	2627854284	442709	68.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15816	Sanguibacter soli strain DCY22 16S ribosomal RNA gene, partial sequence	EF547937	1395		442709

GC content

@ref	GC-content (mol%)	Method
15816	69.8	high performance liquid chromatography (HPLC)
32376	69.8
67770	71.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Flavimobilis soli DSM 21574
NCBI: GCA_002564025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	81.00	no
125439	motility	BacteriaNetⓘ	no	74.00	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sanguibacter soli strain DSM 21574
PATRIC: 442709.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.73	no
125438	anaerobic	anaerobicⓘ	no	94.17	yes
125438	spore-forming	spore-formingⓘ	no	71.97	no
125438	aerobic	aerobicⓘ	yes	63.83	no
125438	thermophilic	thermophileⓘ	no	95.46	yes
125438	flagellated	motile2+ⓘ	no	61.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Flavimobilis rhizosphaerae sp. nov., isolated from rhizosphere soil of Spartina alterniflora.	Cai H, Shi S, Wu J, Yang L, Wang F, Jiang C, Gao C, Yang S, Jiang M, Jiang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004829	2021
Phylogeny	Sanguibacter soli sp. nov., isolated from soil of a ginseng field.	Kim MK, Pulla RK, Kim SY, Yi TH, Soung NK, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.65399-0	2008

References

#15816	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21574
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28604	IJSEM 538 2008 ( DOI 10.1099/ijs.0.65399-0 , PubMed 18319451 )
#32376	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28604
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavimobilis soli (DSM 21574, JCM 14841, KCTC 13155)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002564025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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