Name: Streptococcus oricebi M8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140138

Type strain:

Species: Streptococcus oricebi

Strain Designation: M8

Culture col. no.: CCUG 70868, DSM 100101, JCM 30719

Strain history: M. Saito; Nihon Univ. Sch. of Dent. at Matsudo, Japan; M8.

NCBI tax ID(s): 1547447 (species)

SI-ID 407373

DSM 100101

Special Collections

Section

Streptococcus oricebi M8 is a facultative anaerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from oral cavity of tufted capuchin .

coccus-shaped
colony-forming
Gram-positive
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Streptococcus*
	Species	**Streptococcus oricebi**
	Full Scientific Name (LPSN)	Streptococcus oricebi Saito et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43819]	Gram stain	positive

[Ref.: #43819]	Cell length	0.8-1 µm

[Ref.: #43819]	Cell shape	coccus-shaped

[Ref.: #43819]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90

[Ref.: #43819]	Type of hemolysis	alpha
[Ref.: #43819]	Hemolysis ability	1
[Ref.: #43819]	Colony size	0.6-0.9 mm
[Ref.: #43819]	Colony color	White
[Ref.: #43819]	Colony shape	circular
[Ref.: #43819]	Incubation period	2 days
[Ref.: #43819]	Cultivation medium used	Blood agar

[Ref.: #43819]	Colony color	Dark blue
[Ref.: #43819]	Cultivation medium used	MS agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43819]

Culture medium

Blood agar

[Ref.: #43819]

Culture medium growth

[Ref.: #43819]

Culture medium

MS agar

[Ref.: #43819]

Culture medium growth

[Ref.: #42745]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #42745]

Culture medium growth

[Ref.: #42745]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42745]

Culture medium composition

expand / minimize

[Ref.: #42745]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #42745]

Culture medium growth

[Ref.: #42745]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42745]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #42745]	growth	37 °C
[Ref.: #63760]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43819]	Oxygen tolerance	facultative anaerobe
[Ref.: #63760]	Oxygen tolerance	microaerophile

[Ref.: #43819]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #43819]	Observation	Colonies on MS agar are small and have a crinkled appearance
[Ref.: #43819]	Observation	Cells react with Lancefield group A antisera.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43819]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43819]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43819]	amygdalin ChEBI	-	builds acid from
[Ref.: #43819]	arbutin ChEBI	-	builds acid from
[Ref.: #43819]	arginine ChEBI	+	hydrolysis
[Ref.: #68381]	arginine ChEBI	+	hydrolysis	* from API rID32STR
[Ref.: #43819]	cellobiose ChEBI	-	builds acid from
[Ref.: #43819]	cyclodextrin ChEBI	-	builds acid from
[Ref.: #43819]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43819]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43819]	D-fructose ChEBI	+	builds acid from
[Ref.: #43819]	D-fucose ChEBI	-	builds acid from
[Ref.: #43819]	D-galactose ChEBI	-	builds acid from
[Ref.: #43819]	D-glucose ChEBI	+	builds acid from
[Ref.: #43819]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43819]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43819]	D-mannose ChEBI	+	builds acid from
[Ref.: #43819]	D-ribose ChEBI	-	builds acid from
[Ref.: #68381]	D-ribose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43819]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43819]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43819]	D-xylose ChEBI	-	builds acid from
[Ref.: #43819]	erythritol ChEBI	-	builds acid from
[Ref.: #43819]	esculin ChEBI	+	hydrolysis
[Ref.: #43819]	galactitol ChEBI	-	builds acid from
[Ref.: #43819]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43819]	gluconate ChEBI	-	builds acid from
[Ref.: #43819]	glycerol ChEBI	-	builds acid from
[Ref.: #43819]	glycogen ChEBI	-	builds acid from
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43819]	hippurate ChEBI	-	hydrolysis
[Ref.: #68381]	hippurate ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #43819]	inulin ChEBI	-	builds acid from
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43819]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43819]	L-fucose ChEBI	-	builds acid from
[Ref.: #43819]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43819]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43819]	L-xylose ChEBI	-	builds acid from
[Ref.: #43819]	lactose ChEBI	+	builds acid from
[Ref.: #68381]	lactose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43819]	maltose ChEBI	+	builds acid from
[Ref.: #68381]	maltose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43819]	melezitose ChEBI	-	builds acid from
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43819]	melibiose ChEBI	-	builds acid from
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43819]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43819]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43819]	methyl beta-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43819]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43819]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43819]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43819]	pullulan ChEBI	-	builds acid from
[Ref.: #68381]	pullulan ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43819]	raffinose ChEBI	+	builds acid from
[Ref.: #68381]	raffinose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43819]	ribitol ChEBI	-	builds acid from
[Ref.: #43819]	salicin ChEBI	+	builds acid from
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43819]	starch ChEBI	-	builds acid from
[Ref.: #43819]	sucrose ChEBI	+	builds acid from
[Ref.: #68381]	sucrose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43819]	trehalose ChEBI	+	builds acid from
[Ref.: #68381]	trehalose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43819]	turanose ChEBI	-	builds acid from
[Ref.: #43819]	urea ChEBI	-	hydrolysis
[Ref.: #68381]	urea ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #43819]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43819]		acetoin ChEBI	yes
[Ref.: #68381]		acetoin ChEBI	no	* from API rID32STR

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43819]		acetoin ChEBI	+
[Ref.: #68381]		acetoin ChEBI	-	* from API rID32STR

	Enzyme	Enzyme activity	EC number
[Ref.: #43819]	acid phosphatase	+	3.1.3.2
[Ref.: #43819]	alanine arylamidase	+	3.4.11.2
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #43819]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68381]	alkaline phosphatase	-	3.1.3.1	* from API rID32STR
[Ref.: #43819]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43819]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43819]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43819]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43819]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43819]	arginine dihydrolase	+	3.5.3.6
[Ref.: #68381]	arginine dihydrolase	+	3.5.3.6	* from API rID32STR
[Ref.: #43819]	beta-galactosidase	-	3.2.1.23
[Ref.: #43819]	beta-glucosidase	+	3.2.1.21
[Ref.: #68381]	beta-glucosidase	+	3.2.1.21	* from API rID32STR
[Ref.: #43819]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #43819]	catalase	-	1.11.1.6
[Ref.: #43819]	cystine arylamidase	-	3.4.11.3
[Ref.: #43819]	esterase (C 4)	-
[Ref.: #43819]	esterase Lipase (C 8)	-
[Ref.: #43819]	glycyl tryptophan arylamidase	-
[Ref.: #68381]	glycyl tryptophan arylamidase	-		* from API rID32STR
[Ref.: #43819]	leucine arylamidase	+	3.4.11.1
[Ref.: #43819]	lipase (C 14)	-
[Ref.: #43819]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43819]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43819]	phenylalanine arylamidase	+
[Ref.: #43819]	proline-arylamidase	+	3.4.11.5
[Ref.: #43819]	pyroglutamic acid arylamidase	-
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR
[Ref.: #43819]	trypsin	-	3.4.21.4
[Ref.: #43819]	urease	-	3.5.1.5
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR
[Ref.: #43819]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #42745]	10636	+	+	+	-	+/-	-	-	-	-	+	+	+	+	-	-	-	-	+	+/-	-	+/-	-	-	-	-	+	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42745]	Sample type/isolated from	oral cavity of tufted capuchin (Cebus apella)
[Ref.: #42745]	Host species	Cebus apella
[Ref.: #42745]	Geographic location (country and/or sea, region)	Nasu World Monkey Park, Tochigi
[Ref.: #42745]	Country	Japan
[Ref.: #42745]	Country ISO 3 Code	JPN
[Ref.: #42745]	Continent	Asia

[Ref.: #43819]	Sample type/isolated from	The oral cavity of a tufted capuchin (Nasu World Monkey Park)
[Ref.: #43819]	Geographic location (country and/or sea, region)	Tochigi
[Ref.: #43819]	Country	Japan
[Ref.: #43819]	Country ISO 3 Code	JPN
[Ref.: #43819]	Continent	Asia

[Ref.: #63760]	Sample type/isolated from	Oral cavity,tufted capuchin

[Ref.: #67770]	Sample type/isolated from	Oral cavity of tufted capuchin (Cebus apella)
[Ref.: #67770]	Host species	Cebus apella
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Primates
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC002970 (>99% sequence identity) for Streptococcus oricebi subclade from Microbeatlas

Aquatic Samples	8
Soil Samples	1
Animal Samples	523
Plant Samples	17
Total Samples	549

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42745]	Streptococcus oricebi gene for 16S ribosomal RNA, partial sequence	LC002970	1504	GenBank ENA	1547447 tax ID
[Ref.: #124043]	Streptococcus oricebi JCM 30719 gene for 16S rRNA, partial sequence.	LC638727	1477	GenBank ENA	1547447 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptococcus oricebi CCUG 70868	GCA_017883985	scaffold	GenBank ENA	1547447 tax ID	*
[Ref.: #66792]	Streptococcus oricebi strain CCUG 70868	1547447.3	wgs	PATRIC	1547447 tax ID	*

[Ref.: #42745]

GC-content

42.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptococcus oricebi CCUG 70868 NCBI: GCA_017883985.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptococcus oricebi CCUG 70868 NCBI: GCA_017883985.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.938	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.536	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.919	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	82.093	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	yes

Availability in culture collections External links

[Ref.: #42745]

Culture collection no.

CCUG 70868, DSM 100101, JCM 30719

[Ref.: #96531]

SI-ID 407373

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptococcus oricebi sp. nov., isolated from the oral cavity of tufted capuchin.	Saito M, Shinozaki-Kuwahara N, Hirasawa M, Takada K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000834	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42745

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100101

#43819

M. Saito, N. Shinozaki-Kuwahara, M. Hirasawa, K. Takada: Streptococcus oricebi sp. nov., isolated from the oral cavity of tufted capuchin. IJSEM 66: 1063 - 1067 2016 ( DOI 10.1099/ijsem.0.000834 , PubMed 26651833 )

#63760 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 70868

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68381

Automatically annotated from API rID32STR .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96531

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407373.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Streptococcus oricebi CCUG 70868

Streptococcus oricebi CCUG 70868

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