Name: Phycicoccus sp. YC 6719
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140133

Type strain:

Species: Phycicoccus sp.

Strain Designation: YC 6719

Culture col. no.: DSM 21412

Strain history: <- Y. R. Chung, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; YC 6719

NCBI tax ID(s): 1902410 (species)

SI-ID 401034

DSM 21412

Special Collections

DSMZ

Other strains from Phycicoccus sp.

Section

Phycicoccus sp. YC 6719 is a bacterium that was isolated from rice field, no tillage practice.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Intrasporangiaceae*
	Genus	*Phycicoccus*
	Full Scientific Name (LPSN)	Phycicoccus Lee 2006

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42740]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #42740]

Culture medium growth

[Ref.: #42740]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42740]

Culture medium composition

expand / minimize

[Ref.: #42740]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #42740]

Culture medium growth

[Ref.: #42740]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42740]

Culture medium composition

expand / minimize

[Ref.: #42740]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #42740]

Culture medium growth

[Ref.: #42740]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42740]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42740]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42740]	Sample type/isolated from	rice field, no tillage practice
[Ref.: #42740]	Geographic location (country and/or sea, region)	Jinju
[Ref.: #42740]	Country	Republic of Korea
[Ref.: #42740]	Country ISO 3 Code	KOR
[Ref.: #42740]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU707557 (>99% sequence identity) for Intrasporangiaceae from Microbeatlas

Aquatic Samples	17
Soil Samples	148
Animal Samples	133
Plant Samples	46
Total Samples	344

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42740]	Phycicoccus sp. YC6719 16S ribosomal RNA gene, partial sequence	EU707557	1403	GenBank ENA	535909 tax ID

Availability in culture collections External links

[Ref.: #42740]

Culture collection no.

DSM 21412

[Ref.: #96526]

SI-ID 401034

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42740

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21412

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96526

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401034.1 )

* These data were automatically processed and therefore are not curated

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