Strain identifier

BacDive ID: 140133

Type strain: No

Species: Phycicoccus sp.

Strain Designation: YC 6719

Strain history: <- Y. R. Chung, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; YC 6719

NCBI tax ID(s): 1902410 (species)

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General

@ref: 42740

BacDive-ID: 140133

DSM-Number: 21412

keywords: 16S sequence, Bacteria

description: Phycicoccus sp. YC 6719 is a bacterium that was isolated from rice field, no tillage practice.

NCBI tax id

  • NCBI tax id: 1902410
  • Matching level: species

strain history

  • @ref: 42740
  • history: <- Y. R. Chung, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; YC 6719

doi: 10.13145/bacdive140133.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Intrasporangiaceae
  • genus: Phycicoccus
  • species: Phycicoccus sp.
  • full scientific name: Phycicoccus Lee 2006

@ref: 42740

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Intrasporangiaceae

genus: Phycicoccus

species: Phycicoccus sp.

full scientific name: Phycicoccus sp.

strain designation: YC 6719

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
42740R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
42740TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
42740TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 42740
  • growth: positive
  • type: growth
  • temperature: 28

Isolation, sampling and environmental information

isolation

  • @ref: 42740
  • sample type: rice field, no tillage practice
  • geographic location: Jinju
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_14961.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_670;97_776;98_900;99_14961&stattab=map
  • Last taxonomy: Intrasporangiaceae
  • 16S sequence: EU707557
  • Sequence Identity:
  • Total samples: 344
  • soil counts: 148
  • aquatic counts: 17
  • animal counts: 133
  • plant counts: 46

Sequence information

16S sequences

  • @ref: 42740
  • description: Phycicoccus sp. YC6719 16S ribosomal RNA gene, partial sequence
  • accession: EU707557
  • length: 1403
  • database: nuccore
  • NCBI tax ID: 535909

External links

@ref: 42740

culture collection no.: DSM 21412

straininfo link

  • @ref: 96526
  • straininfo: 401034

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42740Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-21412Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21412)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96526Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401034.1