Name: Sphaerochaeta associata GLS2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140128

Type strain:

Species: Sphaerochaeta associata

Strain Designation: GLS2

Culture col. no.: DSM 26261, VKM B-2742

Strain history: <- V. Shcherbakova, Russian Academy of Sciences, Inst. of Biochem. and Physiol. of Microorganisms, Moscow region; GLS2 <- V. Shcherbakova and O.Y. Troshina {2011}

NCBI tax ID(s): 1129264 (species)

SI-ID 401415

DSM 26261

Special Collections

DSMZ

Section

Sphaerochaeta associata GLS2 is a bacterium that was isolated from culture of Methanosarcina mazei JL01.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Sphaerochaetaceae*
	Genus	*Sphaerochaeta*
	Species	**Sphaerochaeta associata**
	Full Scientific Name (LPSN)	Sphaerochaeta associata Troshina et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42735]

Culture medium

1/2 TRYPTIC SOY BROTH (ANAEROBE) (DSMZ Medium 1205)

[Ref.: #42735]

Culture medium growth

[Ref.: #42735]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42735]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42735]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42735]	Sample type/isolated from	culture of Methanosarcina mazei JL01
[Ref.: #42735]	Host species	Methanosarcina mazei
[Ref.: #42735]	Country	Russia
[Ref.: #42735]	Country ISO 3 Code	RUS
[Ref.: #42735]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	-
#Host	#Microbial	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN944166 (>99% sequence identity) for Sphaerochaeta associata from Microbeatlas

Aquatic Samples	1050
Soil Samples	96
Animal Samples	102
Plant Samples	85
Total Samples	1333

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42735]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42735]	Sphaerochaeta associata strain GLS2 16S ribosomal RNA gene, partial sequence	JN944166	1504	GenBank ENA	1129264 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphaerochaeta associata GLS2	2706794916	draft	JGI IMG/M	1129264 tax ID	*

[Ref.: #42735]

GC-content

47.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #42735]

Culture collection no.

DSM 26261, VKM B-2742

[Ref.: #96522]

SI-ID 401415

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphaerochaeta associata sp. nov., a spherical spirochaete isolated from cultures of Methanosarcina mazei JL01.	Troshina O, Oshurkova V, Suzina N, Machulin A, Ariskina E, Vinokurova N, Kopitsyn D, Novikov A, Shcherbakova V	Int J Syst Evol Microbiol	10.1099/ijsem.0.000575	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42735

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26261

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96522

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401415.1 )

* These data were automatically processed and therefore are not curated

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