Name: Hippea sp. KM1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140043

Type strain:

Species: Hippea sp.

Strain Designation: KM1

Culture col. no.: DSM 24587

Strain history: <- A.-L. Reysenbach, Portland State Univ., USA; KM1 <- Y. Liu {2007}

NCBI tax ID(s): 2614234 (species)

SI-ID 403896

DSM 24587

Section

Hippea sp. KM1 is a thermophilic bacterium that was isolated from hydrothermal vent deposit.

thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfurellales*
	Family	*Desulfurellaceae*
	Genus	*Hippea*
	Full Scientific Name (LPSN)	Hippea Miroshnichenko et al. 1999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42650]

Culture medium

HIPPEA JASONIAE MEDIUM (DSMZ Medium 1360)

[Ref.: #42650]

Culture medium growth

[Ref.: #42650]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42650]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42650]			growth	65 °C

[Ref.: #42650]

Temperature range

thermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42650]	Sample type/isolated from	hydrothermal vent deposit
[Ref.: #42650]	Geographic location (country and/or sea, region)	Pacific Ocean, Eastern Lau Spreading Center, Kilo Moana vent field
[Ref.: #42650]	Country	Tonga
[Ref.: #42650]	Country ISO 3 Code	TON
[Ref.: #42650]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Hydrothermal vent

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR754501 (>99% sequence identity) for Hippea from Microbeatlas

Aquatic Samples	25
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	26

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42650]	Hippea sp. KM1 partial 16S rRNA gene, strain KM1	FR754501	1593	ENA	944481 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hippea sp. KM1	GCA_000526195	contig	GenBank	944481 tax ID	*
[Ref.: #66792]	Hippea sp. KM1	944481.3	wgs	PATRIC	944481 tax ID	*

[Ref.: #42650]

GC-content

41.1 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hippea sp. KM1 PATRIC: 944481.3
[Ref.: #69480]	motile	yes	77.082	no
[Ref.: #69480]	flagellated	no	93.507	no
[Ref.: #69480]	gram-positive	no	99.423	no
[Ref.: #69480]	anaerobic	yes	99.236	no
[Ref.: #69480]	halophile	no	89.257	no
[Ref.: #69480]	spore-forming	no	95.889	no
[Ref.: #69480]	glucose-util	no	62.745	no
[Ref.: #69480]	aerobic	no	98.434	no
[Ref.: #69480]	glucose-ferment	no	78.337	no
[Ref.: #69480]	thermophile	yes	100	no

Availability in culture collections External links

[Ref.: #42650]

Culture collection no.

DSM 24587

[Ref.: #96463]

SI-ID 403896

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42650

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24587

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96463

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403896.1 )

* These data were automatically processed and therefore are not curated

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