Strain identifier
BacDive ID: 140043
Type strain: 
Species: Hippea sp.
Strain Designation: KM1
Strain history: <- A.-L. Reysenbach, Portland State Univ., USA; KM1 <- Y. Liu {2007}
NCBI tax ID(s): 2614234 (species)
version 8.1 (current version)
General
@ref: 42650
BacDive-ID: 140043
DSM-Number: 24587
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Hippea sp. KM1 is a thermophilic bacterium that was isolated from hydrothermal vent deposit.
NCBI tax id
- NCBI tax id: 2614234
- Matching level: species
strain history
- @ref: 42650
- history: <- A.-L. Reysenbach, Portland State Univ., USA; KM1 <- Y. Liu {2007}
doi: 10.13145/bacdive140043.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfurellales
- family: Desulfurellaceae
- genus: Hippea
- species: Hippea sp.
- full scientific name: Hippea Miroshnichenko et al. 1999
@ref: 42650
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfurellales
family: Desulfurellaceae
genus: Hippea
species: Hippea sp.
full scientific name: Hippea sp.
strain designation: KM1
type strain: no
Culture and growth conditions
culture medium
- @ref: 42650
- name: HIPPEA JASONIAE MEDIUM (DSMZ Medium 1360)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1360
- composition: Name: HIPPEA JASONIAE MEDIUM (DSMZ Medium 1360) Composition: NaCl 26.0435 g/l Sulfur 9.8912 g/l Trisodium citrate x 2 H2O 2.90801 g/l MgCl2 x 6 H2O 1.48368 g/l (NH4)2SO4 1.28586 g/l Na-acetate 1.2364 g/l Na2S x 9 H2O 0.49456 g/l Yeast extract 0.49456 g/l KCl 0.445104 g/l KH2PO4 0.276954 g/l MgSO4 x 7 H2O 0.24728 g/l CaCl2 x 2 H2O 0.0692384 g/l FeCl3 x 6 H2O 0.0197824 g/l Na2B4O7 x 10 H2O 0.00445104 g/l MnCl2 x 4 H2O 0.00178042 g/l Sodium resazurin 0.00049456 g/l ZnSO4 x 7 H2O 0.000217606 g/l Pyridoxine hydrochloride 9.8912e-05 g/l Nicotinic acid 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l CuCl2 x 2 H2O 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l VOSO4 x 2 H2O 2.96736e-05 g/l Na2MoO4 x 2 H2O 2.96736e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l CoSO4 x 7 H2O 9.8912e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water
culture temp
- @ref: 42650
- growth: positive
- type: growth
- temperature: 65
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 42650
- sample type: hydrothermal vent deposit
- geographic location: Pacific Ocean, Eastern Lau Spreading Center, Kilo Moana vent field
- country: Tonga
- origin.country: TON
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Condition | #Thermophilic (>45°C) | |
| #Environmental | #Aquatic | #Hydrothermal vent |
taxonmaps
- @ref: 69479
- File name: preview.99_6695.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16072;96_1656;97_1982;98_4938;99_6695&stattab=map
- Last taxonomy: Hippea
- 16S sequence: FR754501
- Sequence Identity:
- Total samples: 26
- soil counts: 1
- aquatic counts: 25
Sequence information
16S sequences
- @ref: 42650
- description: Hippea sp. KM1 partial 16S rRNA gene, strain KM1
- accession: FR754501
- length: 1593
- database: ena
- NCBI tax ID: 944481
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Hippea sp. KM1 | GCA_000526195 | contig | ncbi | 944481 |
| 66792 | Hippea sp. KM1 | 944481.3 | wgs | patric | 944481 |
GC content
- @ref: 42650
- GC-content: 41.1
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 77.082 | no |
| flagellated | no | 93.507 | no |
| gram-positive | no | 99.423 | no |
| anaerobic | yes | 99.236 | no |
| halophile | no | 89.257 | no |
| spore-forming | no | 95.889 | no |
| glucose-util | no | 62.745 | no |
| aerobic | no | 98.434 | no |
| glucose-ferment | no | 78.337 | no |
| thermophile | yes | 100 | no |
External links
@ref: 42650
culture collection no.: DSM 24587
straininfo link
- @ref: 96463
- straininfo: 403896
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42650 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24587 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24587) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96463 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403896.1 |