Rapidithrix thailandica (DSM 103551, JCM 23209, TISTR 1750)

Name: Rapidithrix thailandica (DSM 103551, JCM 23209, TISTR 1750)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140017

Type strain

Culture col. no. DSM 103551 JCM 23209 TISTR 1750 IAM 15448

NCBI tax ID(s) 413964

Special Collections DSMZ JCM Literature strains

History <- JCM 23209T <- IAM 15448 <- A. Yokota <- TISTR 1750 IAM 15448 <-- A. Yokota <-- TISTR 1750.

Links

Rapidithrix thailandica DSM 103551 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from Marine algae.

Gram-negative motile aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 310999

IAM 15448,JCM 23209,TISTR 1750,DSM 103551

@ref 20215

Last LPSN update 2026-02-09 11:33:30

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Flammeovirgaceae

Genus Rapidithrix

Species Rapidithrix thailandica

Full scientific name Rapidithrix thailandica Srisukchayakul et al. 2007

BacDive ID	Other strains from **Rapidithrix thailandica** (1)	Type strain
134259	R. thailandica

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Motility	Flagellum arrangement
32182	negative	60 µm	0.7 µm		gliding

Pigmentation

32182

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42625	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
32182	positive	growth	25-30	mesophilic
32182	positive	optimum	25-30	mesophilic
67770	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32182	positive	optimum	05-10
32182	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

32182

Oxygen toleranceaerobe

Spore formation

32182

Spore formationno

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32182	22599 ChEBI	arabinose	+	carbon source
32182	17057 ChEBI	cellobiose	+	carbon source
32182	33984 ChEBI	fucose	+	carbon source
32182	28260 ChEBI	galactose	+	carbon source
32182	5291 ChEBI	gelatin	+	carbon source
32182	17234 ChEBI	glucose	+	carbon source
32182	17754 ChEBI	glycerol	+	carbon source
32182	17716 ChEBI	lactose	+	carbon source
32182	17306 ChEBI	maltose	+	carbon source
32182	37684 ChEBI	mannose	+	carbon source
32182	28053 ChEBI	melibiose	+	carbon source
32182	27082 ChEBI	trehalose	+	carbon source
32182	53424 ChEBI	tween 20	+	carbon source
32182	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32182	acid phosphatase	+	3.1.3.2
32182	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Algae	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
42625	Marine algae	Andaman Sea, Krabi Province	Thailand	THA	Asia
67770	Marine algae from the Andaman Sea	Krabi Province	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC191863 (>99% sequence identity) for Rapidithrix thailandica subclade from Microbeatlas

Aquatic Samples	103
Soil Samples	3
Animal Samples	4
Plant Samples	1
Total Samples	111

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42625	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3971035v1 assembly for Rapidithrix thailandica JCM 23209	scaffold	GCA_039710355	413964	66.37

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32182	Rapidithrix thailandica gene for 16S ribosomal RNA, partial sequence, strain: TISTR 1750	AB265192	1465		413964
67770	Rapidithrix thailandica gene for 16S ribosomal RNA, partial sequence, strain: JCM 23209	LC191863	1446		413964

GC content

@ref	GC-content (mol%)	Method
32182	40
67770	40	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Marine-Derived Natural Substances with Anticholinesterase Activity.	Dimitrova D, Kehayova G, Dimitrova S, Dragomanova S.	Mar Drugs	10.3390/md23110439	2025
	A new antibacterial amino phenyl pyrrolidone derivative from a novel marine gliding bacterium Rapidithrix thailandica.	Sangnoi Y, Plubrukarn A, Arunpairojana V, Kanjana-Opas A.	World J Microbiol Biotechnol	10.1007/s11274-013-1531-x	2014
	First Description of Marinoquinoline Derivatives' Activity against Toxoplasma gondii.	Diethelm LTH, Ramos ABDSB, de Lorena GB, Trajano BI, do Espirito Santo RD, de Menezes RPB, Scotti MT, Colombo FA, Marques MJ, Correia CRD, Reimao JQ.	Pharmaceutics	10.3390/pharmaceutics16020262	2024
	Fluorescent Marinoquinoline Derivative as Inhibitors of Plasmodium falciparum: SAR Analysis, Mode of Action and In Vivo Studies.	Santos Barbosa P, Souza GE, Maluf SEC, Bonatto V, Moura CS, Mendes GR, Valdes TA, Annunciato Y, Rossetto BDS, Ventura PDS, Ortin GGD, da Silva W, Icimoto MY, Ferreira ADS, Cruz FC, Teles CBG, Pereira DB, Cassiano GC, Santana S, Prudencio M, Barbosa CS, Moura IMR, Giampauli RM, De Sousa IL, Rocco SA, Gazarini ML, Correia CRD, Aguiar ACC, Guido RVC.	J Med Chem	10.1021/acs.jmedchem.5c00138	2025
Metabolism	Diversity and Antimicrobial Potential of Predatory Bacteria from the Peruvian Coastline.	Linares-Otoya L, Linares-Otoya V, Armas-Mantilla L, Blanco-Olano C, Crusemann M, Ganoza-Yupanqui ML, Campos-Florian J, Konig GM, Schaberle TF.	Mar Drugs	10.3390/md15100308	2017
	Anti-Pathogenic Properties of the Combination of a T3SS Inhibitory Halogenated Pyrrolidone with C-30 Furanone.	Aburto-Rodriguez NA, Munoz-Cazares N, Castro-Torres VA, Gonzalez-Pedrajo B, Diaz-Guerrero M, Garcia-Contreras R, Quezada H, Castillo-Juarez I, Martinez-Vazquez M.	Molecules	10.3390/molecules26247635	2021
Pathogenicity	Acetylcholinesterase-inhibiting activity of pyrrole derivatives from a novel marine gliding bacterium, Rapidithrix thailandica.	Sangnoi Y, Sakulkeo O, Yuenyongsawad S, Kanjana-opas A, Ingkaninan K, Plubrukarn A, Suwanborirux K.	Mar Drugs	10.3390/md20080029	2008
Pathogenicity	Insights and ideas garnered from marine metabolites for development of dual-function acetylcholinesterase and amyloid-beta aggregation inhibitors.	Stoddard SV, Hamann MT, Wadkins RM.	Mar Drugs	10.3390/md12042114	2014
Metabolism	A marine sponge associated strain of Bacillus subtilis and other marine bacteria can produce anticholinesterase compounds.	Pandey S, Sree A, Sethi DP, Kumar CG, Kakollu S, Chowdhury L, Dash SS.	Microb Cell Fact	10.1186/1475-2859-13-24	2014
Phylogeny	Rapidithrix thailandica gen. nov., sp. nov., a marine gliding bacterium isolated from samples collected from the Andaman sea, along the southern coastline of Thailand.	Srisukchayakul P, Suwanachart C, Sangnoi Y, Kanjana-Opas A, Hosoya S, Yokota A, Arunpairojana V	Int J Syst Evol Microbiol	10.1099/ijs.0.65087-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28424	IJSEM 2275 2007 ( DOI 10.1099/ijs.0.65087-0 , PubMed 17911296 )
#32182	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28424
#42625	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103551
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rapidithrix thailandica (DSM 103551, JCM 23209, TISTR 1750)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039710355

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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