Name: Marinobacter sp. TT-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 139851

Type strain:

Species: Marinobacter sp.

Strain Designation: TT-1

Culture col. no.: DSM 26291

Strain history: <- T. Gutierrez, School of Life Sci., Heriot-Watt Univ., Edinburgh, UK; TT-1 <- T. Yang, Univ. North Carolina at Chapel Hill, USA

NCBI tax ID(s): 1761792 (species)

SI-ID 401498

DSM 26291

Special Collections

DSMZ

Other strains from Marinobacter sp.

Section

Marinobacter sp. TT-1 is a Gram-negative bacterium that was isolated from deep water plume.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Full Scientific Name (LPSN)	Marinobacter Gauthier et al. 1992

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42459]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #42459]

Culture medium growth

[Ref.: #42459]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42459]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42459]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42459]	Sample type/isolated from	deep water plume
[Ref.: #42459]	Geographic location (country and/or sea, region)	Gulf of Mexico
[Ref.: #42459]	Country	USA
[Ref.: #42459]	Country ISO 3 Code	USA
[Ref.: #42459]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Aquatic	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacter salarius DSM 26291	GCA_900114695	contig	GenBank ENA	1420917 tax ID	*
[Ref.: #66792]	Marinobacter sp. DSM 26291	1761792.3	wgs	PATRIC	1761792 tax ID	*
[Ref.: #66792]	Marinobacter sp. DSM 26291	2619618959	draft	JGI IMG/M	1761792 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinobacter sp. DSM 26291 PATRIC: 1761792.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinobacter sp. DSM 26291 PATRIC: 1761792.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.313	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.978	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.747	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.44	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.484	no

Availability in culture collections External links

[Ref.: #42459]

Culture collection no.

DSM 26291

[Ref.: #96292]

SI-ID 401498

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42459

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26291

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96292

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401498.1 )

* These data were automatically processed and therefore are not curated

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Marinobacter sp. DSM 26291

Marinobacter sp. DSM 26291

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