Strain identifier
BacDive ID: 139851
Type strain: 
Species: Marinobacter sp.
Strain Designation: TT-1
Strain history: <- T. Gutierrez, School of Life Sci., Heriot-Watt Univ., Edinburgh, UK; TT-1 <- T. Yang, Univ. North Carolina at Chapel Hill, USA
NCBI tax ID(s): 1761792 (species)
version 9.1 (current version)
General
@ref: 42459
BacDive-ID: 139851
DSM-Number: 26291
keywords: genome sequence, Bacteria, Gram-negative
description: Marinobacter sp. TT-1 is a Gram-negative bacterium that was isolated from deep water plume.
NCBI tax id
- NCBI tax id: 1761792
- Matching level: species
strain history
- @ref: 42459
- history: <- T. Gutierrez, School of Life Sci., Heriot-Watt Univ., Edinburgh, UK; TT-1 <- T. Yang, Univ. North Carolina at Chapel Hill, USA
doi: 10.13145/bacdive139851.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacter
- species: Marinobacter sp.
- full scientific name: Marinobacter Gauthier et al. 1992
@ref: 42459
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter sp.
full scientific name: Marinobacter sp.
strain designation: TT-1
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.5
Culture and growth conditions
culture medium
- @ref: 42459
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l Sodium pyruvate 10.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 42459
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 42459
- sample type: deep water plume
- geographic location: Gulf of Mexico
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | #Oil (Fuel) |
| #Environmental | #Aquatic |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinobacter salarius DSM 26291 | GCA_900114695 | contig | ncbi | 1420917 |
| 66792 | Marinobacter sp. DSM 26291 | 1761792.3 | wgs | patric | 1761792 |
| 66792 | Marinobacter sp. DSM 26291 | 2619618959 | draft | img | 1761792 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.313 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.978 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 88.747 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.44 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 84.484 | no |
External links
@ref: 42459
culture collection no.: DSM 26291
straininfo link
- @ref: 96292
- straininfo: 401498
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42459 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26291 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26291) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 96292 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401498.1 |