Name: Ureibacillus terrenus TH9A
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1396

Type strain:

Species: Ureibacillus terrenus

Strain Designation: TH9A

Culture col. no.: DSM 12654, LMG 19470, CIP 107065

Strain history: CIP <- 2001, M.G. Fortina, Milan Univ., Milan, Italy: strain TH9A <- C. Parini and P.L. Manachini

NCBI tax ID(s): 118246 (species)

SI-ID 14616

LMG 19470, ATCC BAA-384, DSM 12654, CIP 107065, KCTC 3852, KACC 10908

Special Collections

Other strains from Ureibacillus terrenus

Section

Ureibacillus terrenus TH9A is an aerobe, spore-forming, Gram-negative bacterium that forms circular colonies and was isolated from soil.

colony-forming
Gram-negative
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Ureibacillus*
	Species	**Ureibacillus terrenus**
	Full Scientific Name (LPSN)	Ureibacillus terrenus Fortina et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #23024]	Gram stain	negative
[Ref.: #123470]	Gram stain	negative

[Ref.: #23024]	Cell length	1.0-6.0 µm

[Ref.: #23024]	Cell width	0.5-0.7 µm

[Ref.: #23024]	Cell shape	rod-shaped
[Ref.: #123470]	Cell shape	rod-shaped

[Ref.: #23024]	Motility	yes
[Ref.: #123470]	Motility	yes

[Ref.: #23024]	Colony color	transparent
[Ref.: #23024]	Colony shape	circular
[Ref.: #23024]	Incubation period	1-1.5 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4782]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #4782]

Culture medium growth

[Ref.: #4782]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4782]

Culture medium composition

expand / minimize

[Ref.: #39649]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #39649]

Culture medium growth

[Ref.: #39649]

Culture medium composition

expand / minimize

[Ref.: #123470]

Culture medium

CIP Medium 72

[Ref.: #123470]

Culture medium growth

[Ref.: #123470]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4782]		growth	55 °C
[Ref.: #23024]	no	growth	37.0 °C
[Ref.: #23024]		growth	65.0 °C
[Ref.: #23024]		growth	42.0-65.0 °C
[Ref.: #39649]		growth	55 °C
[Ref.: #123470]	no	growth	30 °C
[Ref.: #123470]	no	growth	22 °C
[Ref.: #123470]	no	growth	10 °C
[Ref.: #123470]		growth	45-55 °C
[Ref.: #123470]	no	growth	37 °C

	Kind of pH		pH
[Ref.: #23024]		growth	7.0
[Ref.: #23024]	inconsistent	growth	9.0
[Ref.: #123470]		growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23024]	Oxygen tolerance	aerobe
[Ref.: #123470]	Oxygen tolerance	obligate aerobe

[Ref.: #23024]	Spore description	spherical,terminal or subterminal,in swollen sporangia
[Ref.: #23024]	Type of spore	endospore
[Ref.: #23024]	Ability of spore formation	yes
[Ref.: #123470]	Ability of spore formation	yes

	Salt	Tested relation		Salt conc.
[Ref.: #23024]	NaCl	inconsistent	growth	5.0	%
[Ref.: #123470]	NaCl		growth	0-2	%
[Ref.: #123470]	NaCl	no	growth	4	%
[Ref.: #123470]	NaCl	no	growth	6	%
[Ref.: #123470]	NaCl	no	growth	8	%
[Ref.: #123470]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23024]	casein	-	hydrolysis
[Ref.: #23024]	citrate ChEBI	+	builds acid from
[Ref.: #123470]	citrate ChEBI	-	carbon source
[Ref.: #123470]	esculin ChEBI	-	hydrolysis
[Ref.: #23024]	gelatin ChEBI	-	hydrolysis
[Ref.: #23024]	glucose ChEBI	+	builds acid from
[Ref.: #123470]	hippurate ChEBI	-	hydrolysis
[Ref.: #23024]	L-arabinose ChEBI	+	builds acid from
[Ref.: #23024]	maltose ChEBI	+	builds acid from
[Ref.: #23024]	mannose ChEBI	+	builds acid from
[Ref.: #23024]	nitrate ChEBI	-	reduction
[Ref.: #123470]	nitrate ChEBI	-	reduction
[Ref.: #123470]	nitrate ChEBI	-	respiration
[Ref.: #123470]	nitrite ChEBI	-	reduction
[Ref.: #23024]	rhamnose ChEBI	+	builds acid from
[Ref.: #23024]	ribose ChEBI	+	builds acid from
[Ref.: #23024]	starch ChEBI	-	hydrolysis
[Ref.: #23024]	sucrose ChEBI	+	builds acid from
[Ref.: #23024]	trehalose ChEBI	+	builds acid from
[Ref.: #23024]	urea ChEBI	+	hydrolysis
[Ref.: #23024]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23024]	acetoin ChEBI	no
[Ref.: #23024]	indole ChEBI	no
[Ref.: #123470]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #23024]	acetoin ChEBI	-
[Ref.: #123470]	acetoin ChEBI	-
[Ref.: #123470]	glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123470]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123470]	amylase	-
[Ref.: #123470]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123470]	caseinase	-	3.4.21.50
[Ref.: #123470]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #123470]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123470]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #123470]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123470]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123470]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123470]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123470]	tween esterase	-
[Ref.: #123470]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123470]	10033	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4782]	Sample type/isolated from	soil
[Ref.: #4782]	Country	Italy
[Ref.: #4782]	Country ISO 3 Code	ITA
[Ref.: #4782]	Continent	Europe

[Ref.: #123470]	Sample type/isolated from	Environment, Soil
[Ref.: #123470]	Country	Italy
[Ref.: #123470]	Country ISO 3 Code	ITA
[Ref.: #123470]	Continent	Europe
[Ref.: #123470]	Isolation date	1998
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ276403 (>99% sequence identity) for Ureibacillus terrenus subclade from Microbeatlas

Aquatic Samples	533
Soil Samples	1953
Animal Samples	880
Plant Samples	775
Total Samples	4141

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4782]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123470]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23024]	Bacillus sp. TH9A partial 16S rRNA gene, strain DSM 12654	AJ276403	1489	GenBank ENA	118246 tax ID
[Ref.: #20218]	Ureibacillus terrenus isolate Ut4 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723667	581	GenBank ENA	118246 tax ID	*
[Ref.: #20218]	Ureibacillus terrenus isolate Ut7 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723668	549	GenBank ENA	118246 tax ID	*

[Ref.: #23024]

GC-content

39.6 mol%

Availability in culture collections External links

[Ref.: #4782]

Culture collection no.

DSM 12654, LMG 19470, CIP 107065

[Ref.: #71047]

SI-ID 14616

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ureibacillus defluvii sp. nov., isolated from a thermophilic microbial fuel cell.	Zhou S, Tang J, Qin D, Lu Q, Yang G	Int J Syst Evol Microbiol	10.1099/ijs.0.056655-0	2014	*
Phylogeny	Ureibacillus suwonensis sp. nov., isolated from cotton waste composts.	Kim BY, Lee SY, Weon HY, Kwon SW, Go SJ, Park YK, Schumann P, Fritze D	Int J Syst Evol Microbiol	10.1099/ijs.0.63703-0	2006	*
Genetics	Phenotypic and genotypic characterization of esterase-producing Ureibacillus thermosphaericus isolated from an aerobic digestor of swine waste.	Gagne A, Chicoine M, Morin A, Houde A	Can J Microbiol	10.1139/w01-096	2001	*
Phylogeny	Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov.	Fortina MG, Pukall R, Schumann P, Mora D, Parini C, Manachini PL, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/00207713-51-2-447	2001	*

References

#4782

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12654

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23024

M. G. Fortina,R. Pukall,P. Schumann,D. Mora,C. Parini,P. L. Manachini,E. Stackebrandt: Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov.. IJSEM 51: 447 - 455 2001 ( DOI 10.1099/00207713-51-2-447 , PubMed 11321090 )

#39649 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71047

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14616.1 )

#123470 Collection of Institut Pasteur ; Curators of the CIP; CIP 107065
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Ureibacillus terrenus in external resources:
SILVA
BRENDA
PANGAEA
GBIF