Strain identifier

BacDive ID: 1396

Type strain: Yes

Species: Ureibacillus terrenus

Strain Designation: TH9A

Strain history: CIP <- 2001, M.G. Fortina, Milan Univ., Milan, Italy: strain TH9A <- C. Parini and P.L. Manachini

NCBI tax ID(s): 118246 (species)

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General

@ref: 4782

BacDive-ID: 1396

DSM-Number: 12654

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-negative, motile, rod-shaped, colony-forming

description: Ureibacillus terrenus TH9A is an aerobe, spore-forming, Gram-negative bacterium that forms circular colonies and was isolated from soil.

NCBI tax id

  • NCBI tax id: 118246
  • Matching level: species

strain history

@refhistory
4782<- D. Mora; TH9A
123470CIP <- 2001, M.G. Fortina, Milan Univ., Milan, Italy: strain TH9A <- C. Parini and P.L. Manachini

doi: 10.13145/bacdive1396.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Ureibacillus
  • species: Ureibacillus terrenus
  • full scientific name: Ureibacillus terrenus Fortina et al. 2001

@ref: 4782

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Caryophanaceae

genus: Ureibacillus

species: Ureibacillus terrenus

full scientific name: Ureibacillus terrenus Fortina et al. 2001

strain designation: TH9A

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
23024negative1.0-6.0 µm0.5-0.7 µmrod-shapedyes
123470negativerod-shapedyes

colony morphology

  • @ref: 23024
  • colony color: transparent
  • colony shape: circular
  • incubation period: 1-1.5 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4782CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Soil extract 500.0 g/l Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
39649MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123470CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
4782positivegrowth55
23024nogrowth37.0
23024positivegrowth65.0
23024positivegrowth42.0-65.0
39649positivegrowth55
123470positivegrowth45-55
123470nogrowth10
123470nogrowth22
123470nogrowth30
123470nogrowth37

culture pH

@refabilitytypepH
23024positivegrowth7.0
23024inconsistentgrowth9.0
123470positivegrowth6

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23024aerobe
123470obligate aerobe

spore formation

@refspore descriptiontype of sporespore formation
23024spherical,terminal or subterminal,in swollen sporangiaendosporeyes
123470yes

halophily

@refsaltgrowthtested relationconcentration
23024NaClinconsistentgrowth5.0 %
123470NaClpositivegrowth0-2 %
123470NaClnogrowth4 %
123470NaClnogrowth6 %
123470NaClnogrowth8 %
123470NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
23024casein-hydrolysis
23024gelatin-hydrolysis5291
23024starch-hydrolysis28017
23024nitrate-reduction17632
23024citrate+builds acid from16947
23024glucose+builds acid from17234
23024L-arabinose+builds acid from30849
23024maltose+builds acid from17306
23024mannose+builds acid from37684
23024rhamnose+builds acid from26546
23024ribose+builds acid from33942
23024sucrose+builds acid from17992
23024trehalose+builds acid from27082
23024xylose+builds acid from18222
23024urea+hydrolysis16199
123470citrate-carbon source16947
123470esculin-hydrolysis4853
123470hippurate-hydrolysis606565
123470nitrate-reduction17632
123470nitrite-reduction16301
123470nitrate-respiration17632

metabolite production

@refChebi-IDmetaboliteproduction
2302435581indoleno
2302415688acetoinno
12347035581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
2302415688acetoin-
12347015688acetoin-
12347017234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
123470oxidase+
123470beta-galactosidase-3.2.1.23
123470alcohol dehydrogenase-1.1.1.1
123470gelatinase-
123470amylase-
123470DNase+
123470caseinase-3.4.21.50
123470catalase+1.11.1.6
123470tween esterase-
123470gamma-glutamyltransferase-2.3.2.2
123470lysine decarboxylase-4.1.1.18
123470ornithine decarboxylase-4.1.1.17
123470urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123470--++-+----++--------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
4782soilItalyITAEurope
123470Environment, SoilItalyITAEurope1998

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_86867.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_8510;97_42068;98_60082;99_86867&stattab=map
  • Last taxonomy: Ureibacillus terrenus subclade
  • 16S sequence: AJ276403
  • Sequence Identity:
  • Total samples: 4141
  • soil counts: 1953
  • aquatic counts: 533
  • animal counts: 880
  • plant counts: 775

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
47821Risk group (German classification)
1234701Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Ureibacillus terrenus isolate Ut4 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceEU723667581nuccore118246
20218Ureibacillus terrenus isolate Ut7 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceEU723668549nuccore118246
23024Bacillus sp. TH9A partial 16S rRNA gene, strain DSM 12654AJ2764031489nuccore118246

GC content

  • @ref: 23024
  • GC-content: 39.6

External links

@ref: 4782

culture collection no.: DSM 12654, LMG 19470, CIP 107065

straininfo link

  • @ref: 71047
  • straininfo: 14616

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11321090Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov.Fortina MG, Pukall R, Schumann P, Mora D, Parini C, Manachini PL, Stackebrandt EInt J Syst Evol Microbiol10.1099/00207713-51-2-4472001Bacillus/*classification/cytology, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal, Fatty Acids/analysis, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S, Sequence Homology, Nucleic Acid, *Soil Microbiology, Terminology as Topic, Vitamin K/analysisGenetics
Genetics11718544Phenotypic and genotypic characterization of esterase-producing Ureibacillus thermosphaericus isolated from an aerobic digestor of swine waste.Gagne A, Chicoine M, Morin A, Houde ACan J Microbiol10.1139/w01-0962001Aerobiosis, Animals, Base Sequence, Culture Media, *Environmental Microbiology, Esterases/biosynthesis/*metabolism, Genes, Bacterial, Genotype, *Gram-Negative Bacteria/chemistry/classification/physiology, Manure/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, RNA, Spores, Bacterial/genetics, SwinePhylogeny
Phylogeny16514046Ureibacillus suwonensis sp. nov., isolated from cotton waste composts.Kim BY, Lee SY, Weon HY, Kwon SW, Go SJ, Park YK, Schumann P, Fritze DInt J Syst Evol Microbiol10.1099/ijs.0.63703-02006Bacillus/*classification/genetics/isolation & purification/physiology, DNA, Bacterial, DNA, Ribosomal/chemistry, Gossypium, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyPhenotype
Phylogeny24491829Ureibacillus defluvii sp. nov., isolated from a thermophilic microbial fuel cell.Zhou S, Tang J, Qin D, Lu Q, Yang GInt J Syst Evol Microbiol10.1099/ijs.0.056655-02014Bacterial Typing Techniques, Base Composition, Bioelectric Energy Sources/*microbiology, Biofilms, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4782Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12654)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12654
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23024M. G. Fortina,R. Pukall,P. Schumann,D. Mora,C. Parini,P. L. Manachini,E. Stackebrandt10.1099/00207713-51-2-447Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov.IJSEM 51: 447-455 200111321090
39649Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/19264
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71047Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14616.1StrainInfo: A central database for resolving microbial strain identifiers
123470Curators of the CIPCollection of Institut Pasteur (CIP 107065)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107065