Name: Flavobacterium tructae 435-08
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 139428

Type strain:

Species: Flavobacterium tructae

Strain Designation: 435-08

Culture col. no.: CIP 110845, CCUG 60100, CECT 7791

Strain history: CIP <- 2014, CCUG <- 2010 A.I. Vela, UCM, Madrid, Spain: strain 435-08

NCBI tax ID(s): 1114873 (species)

SI-ID 392249

CECT 7791, CCUG 60100, CIP 110845

Section

Flavobacterium tructae 435-08 is an aerobe, mesophilic, Gram-negative bacterium of the family Flavobacteriaceae.

Gram-negative
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium tructae**
	Full Scientific Name (LPSN)	Flavobacterium tructae Zamora et al. 2014

Synonym

Flavobacterium spartansii

Information on morphological and physiological properties Morphology

[Ref.: #41605]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #41605]	Cell shape	rod-shaped

[Ref.: #41605]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41605]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41605]

Culture medium growth

[Ref.: #41605]

Culture medium composition

expand / minimize

[Ref.: #41605]

Culture medium

CIP Medium 72

[Ref.: #41605]

Culture medium growth

[Ref.: #41605]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #41605]

Culture medium

CIP Medium 566

[Ref.: #41605]

Culture medium growth

[Ref.: #41605]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #41605]			growth	30 °C
[Ref.: #62199]			growth	30 °C

[Ref.: #41605]	Temperature range	mesophilic
[Ref.: #62199]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62199]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #62199]	8597	-	-	-	-	-	+	-	+	+	-	+	-	+	+	-	-	-	-	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #62199]	4485	-	+	-	-	-	+	+	-	-	-	+	+	+	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #62199]	Sample type/isolated from	Trout liver
[Ref.: #62199]	Sampling date	2008-04-20
[Ref.: #62199]	Geographic location (country and/or sea, region)	Madrid
[Ref.: #62199]	Country	Spain
[Ref.: #62199]	Country ISO 3 Code	ESP
[Ref.: #62199]	Continent	Europe

[Ref.: #41605]	Sample type/isolated from	Trout, liver
[Ref.: #41605]	Geographic location (country and/or sea, region)	Madrid
[Ref.: #41605]	Country	Spain
[Ref.: #41605]	Country ISO 3 Code	ESP
[Ref.: #41605]	Continent	Europe
[Ref.: #41605]	Isolation date	2008-04-20

[Ref.: #41605]	Geographic location (country and/or sea, region)	Madrid
[Ref.: #41605]	Country	Spain
[Ref.: #41605]	Country ISO 3 Code	ESP
[Ref.: #41605]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host	#Fishes	#Salmonidae
#Host Body-Site	#Organ	#Liver

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #41605]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium tructae CCUG 60100	GCA_002217475	scaffold	GenBank	1114873 tax ID	*
[Ref.: #66792]	Flavobacterium tructae strain CCUG 60100	1114873.5	wgs	PATRIC	1114873 tax ID	*
[Ref.: #66792]	Flavobacterium tructae CCUG 60100	2904731956	draft	JGI IMG/M	1114873 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium tructae CCUG 60100 NCBI: GCA_002217475.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium tructae CCUG 60100 NCBI: GCA_002217475.1
[Ref.: #69480]	flagellated	no	94.28	no
[Ref.: #69480]	gram-positive	no	98.23	no
[Ref.: #69480]	anaerobic	no	99.785	yes
[Ref.: #69480]	aerobic	yes	87.671	yes
[Ref.: #69480]	halophile	no	97.476	no
[Ref.: #69480]	spore-forming	no	91.38	no
[Ref.: #69480]	thermophile	no	99.432	yes
[Ref.: #69480]	glucose-util	yes	87.681	no
[Ref.: #69480]	motile	no	86.964	no
[Ref.: #69480]	glucose-ferment	no	89.697	yes

Availability in culture collections External links

[Ref.: #41605]

Culture collection no.

CIP 110845, CCUG 60100, CECT 7791

[Ref.: #95931]

SI-ID 392249

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium tructae sp. nov. and Flavobacterium piscis sp. nov., isolated from farmed rainbow trout (Oncorhynchus mykiss).	Zamora L, Vela AI, Sanchez-Porro C, Palacios MA, Moore ERB, Dominguez L, Ventosa A, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.056341-0	2013	*
Phylogeny	Flavobacterium aquicola sp. nov., isolated from river water.	Hatayama K, Ushida A, Kuno T	Int J Syst Evol Microbiol	10.1099/ijsem.0.001057	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41605 Collection of Institut Pasteur ; Curators of the CIP; CIP 110845
#62199 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60100

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#95931

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID392249.1 )

* These data were automatically processed and therefore are not curated

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Flavobacterium tructae CCUG 60100

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