Strain identifier

BacDive ID: 139428

Type strain: Yes

Species: Flavobacterium tructae

Culture col. no.: CIP 110845, CCUG 60100, CECT 7791

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General

@ref: 41605

BacDive-ID: 139428

keywords: aerobe, Bacteria, genome sequence, mesophilic

description: Flavobacterium tructae CIP 110845 is an aerobe, mesophilic bacterium of the family Flavobacteriaceae.

doi: 10.13145/bacdive139428.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium tructae
  • full scientific name: Flavobacterium tructae Zamora et al. 2014

@ref: 41605

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium tructae

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 41605
  • name: MEDIUM 72- for trypto casein soja agar
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
41605positivegrowth30mesophilic
62199positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62199
  • oxygen tolerance: aerobe

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
62199-+---++---+++--+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
62199-----+-++-+-++----+-+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typesampling date
41605MadridSpainESPEurope
62199MadridSpainESPEuropeTrout liver2008-04-20

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Organ#Liver
#Host#Fishes#Salmonidae

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium tructae CCUG 60100GCA_002217475scaffoldncbi1114873
66792Flavobacterium tructae strain CCUG 601001114873.5wgspatric1114873

External links

@ref: 41605

culture collection no.: CIP 110845, CCUG 60100, CECT 7791

straininfo link

@refpassport
20218http://www.straininfo.net/strains/893398
20218http://www.straininfo.net/strains/893397

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
41605Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34399 Collection of Institut Pasteur (CIP 110845)
62199Curators of the CCUGhttps://www.ccug.se/strain?id=60100Culture Collection University of Gothenburg (CCUG) (CCUG 60100)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes