Paeniclostridium sordellii (CIP 60.18, 82)

Name: Paeniclostridium sordellii (CIP 60.18, 82)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139417

Type strain

Strain Designation 82

Culture col. no. CIP 60.18 82

NCBI tax ID(s) 1505

Special Collections CIP

History CIP <- 1960, Sordelli: strain 82 CIP <- 1960, Sordelli: strain 82

Links

Paeniclostridium sordellii 82 is an anaerobe, spore-forming, Gram-positive bacterium of the family Peptostreptococcaceae.

spore-forming Gram-positive rod-shaped anaerobe Bacteria

Name and taxonomic classification

SI-ID 67938

CIP 60.18

@ref 20215

Last LPSN update 2026-05-29 08:39:29

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Peptostreptococcales

Family Peptostreptococcaceae

Genus Paeniclostridium

Species Paeniclostridium sordellii

Full scientific name Paeniclostridium sordellii (Hall and Scott 1927) Sasi Jyothsna et al. 2016

Synonyms (3)

"Bacillus sordellii"
Clostridium sordellii
Paraclostridium sordellii

BacDive ID	Other strains from **Paeniclostridium sordellii** (9)	Type strain
2666	P. sordellii 211, DSM 2141, ATCC 9714, NCIB 10717, CCUG ... (type strain)
130928	P. sordellii MJJO609-3-1, DSM 29974
139094	P. sordellii LRA 051 07 89, CIP 103710, JCM 11011
141754	P. sordellii CCUG 6329, NCTC 8780
147226	P. sordellii CCUG 33098
149145	P. sordellii CCUG 36938
151037	P. sordellii CCUG 43123
155970	P. sordellii CCUG 59819
156626	P. sordellii CCUG 63734

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
41581	positive	rod-shaped

Colony morphology

41581

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
41581	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
41581	CIP Medium 20			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
41581	positive	growth	37

Physiology and metabolism

Oxygen tolerance

41581

Oxygen toleranceanaerobe

Spore formation

41581

Spore formationyes

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
41581	17057 ChEBI	cellobiose	-	degradation
41581	15824 ChEBI	D-fructose	+/-	degradation
41581	17634 ChEBI	D-glucose	+/-	degradation
41581	65327 ChEBI	D-xylose	-	degradation
41581	4853 ChEBI	esculin	-	hydrolysis
41581	17716 ChEBI	lactose	-	degradation
41581	17306 ChEBI	maltose	+/-	degradation
41581	17632 ChEBI	nitrate	-	reduction
41581	17632 ChEBI	nitrate	+	respiration
41581	16301 ChEBI	nitrite	+	reduction
41581	17814 ChEBI	salicin	-	degradation
41581	17992 ChEBI	sucrose	-	degradation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
41581	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
41581	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
41581	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
41581	caseinase	+	3.4.21.50
41581	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
41581	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
41581	gelatinase	+
41581	lecithinase	+
68382	leucine arylamidase	-	3.4.11.1	from API zym
41581	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
41581	oxidase	-
41581	protease	+
68382	trypsin	+	3.4.21.4	from API zym
41581	tween esterase	-
41581	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	gluconeogenesis	100	8 of 8
66794	L-lactaldehyde degradation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	metabolism of amino sugars and derivatives	100	5 of 5
66794	phenylmercury acetate degradation	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	purine metabolism	80.85	76 of 94
66794	glycine betaine biosynthesis	80	4 of 5
66794	hydrogen production	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	lipoate biosynthesis	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	vitamin B12 metabolism	79.41	27 of 34
66794	alanine metabolism	79.31	23 of 29
66794	heme metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	vitamin B1 metabolism	76.92	10 of 13
66794	CMP-KDO biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	pyrimidine metabolism	73.33	33 of 45
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	starch degradation	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	urea cycle	69.23	9 of 13
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	serine metabolism	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	glycolysis	64.71	11 of 17
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	isoleucine metabolism	62.5	5 of 8
66794	NAD metabolism	61.11	11 of 18
66794	glutamate and glutamine metabolism	60.71	17 of 28
66794	non-pathway related	60.53	23 of 38
66794	factor 420 biosynthesis	60	3 of 5
66794	threonine metabolism	60	6 of 10
66794	myo-inositol biosynthesis	60	6 of 10
66794	Entner Doudoroff pathway	60	6 of 10
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	propanol degradation	57.14	4 of 7
66794	oxidative phosphorylation	56.04	51 of 91
66794	degradation of hexoses	55.56	10 of 18
66794	valine metabolism	55.56	5 of 9
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	phenylalanine metabolism	53.85	7 of 13
66794	isoprenoid biosynthesis	50	13 of 26
66794	butanoate fermentation	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	ribulose monophosphate pathway	50	1 of 2
66794	adipate degradation	50	1 of 2
66794	suberin monomers biosynthesis	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	lactate fermentation	50	2 of 4
66794	propionate fermentation	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	arginine metabolism	50	12 of 24
66794	sulfopterin metabolism	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	lipid metabolism	48.39	15 of 31
66794	histidine metabolism	48.28	14 of 29
66794	tryptophan metabolism	47.37	18 of 38
66794	sulfate reduction	46.15	6 of 13
66794	proline metabolism	45.45	5 of 11
66794	pentose phosphate pathway	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	lysine metabolism	42.86	18 of 42
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	creatinine degradation	40	2 of 5
66794	degradation of sugar acids	40	10 of 25
66794	arachidonate biosynthesis	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	leucine metabolism	38.46	5 of 13
66794	metabolism of disaccharids	36.36	4 of 11
66794	degradation of pentoses	35.71	10 of 28
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	pantothenate biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	ascorbate metabolism	31.82	7 of 22
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	tyrosine metabolism	28.57	4 of 14
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	vitamin B6 metabolism	27.27	3 of 11
66794	degradation of sugar alcohols	25	4 of 16
66794	catecholamine biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	carnitine metabolism	25	2 of 8
66794	arachidonic acid metabolism	22.22	4 of 18
66794	glutathione metabolism	21.43	3 of 14

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
41581	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
41581	2	Risk group (French classification)

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41581	Collection of Institut Pasteur ; Curators of the CIP; CIP 60.18
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paeniclostridium sordellii (CIP 60.18, 82)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome-based predictions

Literature

References

BacDive

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