Name: Denitratisoma oestradiolicum AcBE2-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13931

Type strain:

Species: Denitratisoma oestradiolicum

Strain Designation: AcBE2-1, AcBE2I

Culture col. no.: DSM 16959, JCM 12830

Strain history: M. Fahrbach AcBE2-1.

NCBI tax ID(s): 311182 (species)

SI-ID 135100

DSM 16959, JCM 12830

Section

Denitratisoma oestradiolicum AcBE2-1 is an aerobe, Gram-negative, motile bacterium that was isolated from enrichment culture inoculated with activated sludge from a municipal wastewater treatment plant.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Nitrosomonadales*
	Family	*Sterolibacteriaceae*
	Genus	*Denitratisoma*
	Species	**Denitratisoma oestradiolicum**
	Full Scientific Name (LPSN)	Denitratisoma oestradiolicum Fahrbach et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31488]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #31488]	Cell length	0.8-2 µm

[Ref.: #31488]	Cell width	0.4-0.8 µm

[Ref.: #31488]	Cell shape	rod-shaped

[Ref.: #31488]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.073

[Ref.: #31488]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31488]	growth	04-38 °C
[Ref.: #31488]	optimum	28-30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #31488]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31488]			optimum	7-7.2
[Ref.: #31488]			growth	6.4-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31488]

Oxygen tolerance

aerobe

[Ref.: #31488]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31488]		NaCl		growth	0-1	%
[Ref.: #31488]		NaCl		optimum	0-1	%

[Ref.: #31488]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31488]	acetate ChEBI	+	carbon source
[Ref.: #31488]	nitrate ChEBI	+	reduction
[Ref.: #31488]	pyruvate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31488]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6670]	Sample type/isolated from	enrichment culture inoculated with activated sludge from a municipal wastewater treatment plant
[Ref.: #6670]	Geographic location (country and/or sea, region)	Aachen-Soers
[Ref.: #6670]	Country	Germany
[Ref.: #6670]	Country ISO 3 Code	DEU
[Ref.: #6670]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Activated sludge of a municipal wastewater treatment plant
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Water treatment plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY879297 (>99% sequence identity) for Denitratisoma oestradiolicum subclade from Microbeatlas

Aquatic Samples	58
Soil Samples	4
Animal Samples	10
Plant Samples	1
Total Samples	73

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6670]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6670]	Denitratisoma oestradiolicum strain AcBE2-1 16S ribosomal RNA gene, partial sequence	AY879297	1492	ENA	311182 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Denitratisoma oestradiolicum DSM 16959	GCA_007844305	scaffold	GenBank	311182 tax ID
[Ref.: #66792]	Denitratisoma oestradiolicum DSM 16959	GCA_902813185	complete	GenBank	311182 tax ID	*
[Ref.: #66792]	Denitratisoma oestradiolicum strain DSM 16959	311182.4	complete	PATRIC	311182 tax ID	*
[Ref.: #66792]	Denitratisoma oestradiolicum strain DSM 16959 strain not collected	311182.3	wgs	PATRIC	311182 tax ID	*

[Ref.: #6670]	GC-content	61.4 mol%
[Ref.: #67770]	GC-content	61.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Denitratisoma oestradiolicum DSM 16959 NCBI: GCA_902813185.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Denitratisoma oestradiolicum DSM 16959 NCBI: GCA_902813185.1
[Ref.: #69480]	flagellated	yes	56.985	no
[Ref.: #69480]	gram-positive	no	98.38	yes
[Ref.: #69480]	anaerobic	no	93.871	yes
[Ref.: #69480]	aerobic	no	63.132	yes
[Ref.: #69480]	halophile	no	94.178	yes
[Ref.: #69480]	spore-forming	no	94.122	yes
[Ref.: #69480]	thermophile	no	91.944	yes
[Ref.: #69480]	glucose-util	no	81.807	no
[Ref.: #69480]	motile	yes	87.82	no
[Ref.: #69480]	glucose-ferment	no	90.069	no

Availability in culture collections External links

[Ref.: #6670]

Culture collection no.

DSM 16959, JCM 12830

[Ref.: #83105]

SI-ID 135100

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Usitatibacter rugosus gen. nov., sp. nov. and Usitatibacter palustris sp. nov., novel members of Usitatibacteraceae fam. nov. within the order Nitrosomonadales isolated from soil.	Vieira S, Huber KJ, Neumann-Schaal M, Geppert A, Luckner M, Wanner G, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004631	2021	*
Phylogeny	Sulfuritalea hydrogenivorans gen. nov., sp. nov., a facultative autotroph isolated from a freshwater lake.	Kojima H, Fukui M	Int J Syst Evol Microbiol	10.1099/ijs.0.024968-0	2010	*
Metabolism	Denitratisoma oestradiolicum gen. nov., sp. nov., a 17beta-oestradiol-degrading, denitrifying betaproteobacterium.	Fahrbach M, Kuever J, Meinke R, Kampfer P, Hollender J	Int J Syst Evol Microbiol	10.1099/ijs.0.63672-0	2006	*

References

#6670

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16959

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31488

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27786 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83105

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID135100.1 )

#27786

IJSEM 1547 2006 ( DOI 10.1099/ijs.0.63672-0 , PubMed 16825628 )

* These data were automatically processed and therefore are not curated

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Denitratisoma oestradiolicum DSM 16959

Denitratisoma oestradiolicum DSM 16959

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