Azovibrio restrictus S5b2 | Type strain | DSM 23866, LMG 22128, LMG 9099 | BacDiveID:13930

Strain identifier

BacDive ID: 13930

Type strain:

Species: Azovibrio restrictus

Strain Designation: S5b2

Culture col. no.: DSM 23866, LMG 22128, LMG 9099

Strain history: <- LMG <- B. Reinhold-Hurek, Univ. Bremen, Germany

NCBI tax ID(s): 1121035 (strain), 146938 (species)

SI-ID 13096

LMG 9099, LMG 22128, DSM 23866

Section

Azovibrio restrictus S5b2 is a mesophilic, motile bacterium that was isolated from Kallar grass, surface-sterilized roots.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Rhodocyclaceae*
	Genus	*Azovibrio*
	Species	**Azovibrio restrictus**
	Full Scientific Name (LPSN)	Azovibrio restrictus Reinhold-Hurek and Hurek 2000

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	yes Confidence in %99.69

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17415]			growth	28 °C

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.984

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17415]	Sample type/isolated from	Kallar grass, surface-sterilized roots
[Ref.: #17415]	Geographic location (country and/or sea, region)	Punjab
[Ref.: #17415]	Country	Pakistan
[Ref.: #17415]	Country ISO 3 Code	PAK
[Ref.: #17415]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17415]	Azovibrio restrictus 16S ribosomal RNA gene, partial sequence	AF011346	1485	ENA	146938 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Azovibrio restrictus DSM 23866	GCA_000429665	scaffold	GenBank	1121035 tax ID	*
[Ref.: #66792]	Azovibrio restrictus DSM 23866	1121035.3	wgs	PATRIC	1121035 tax ID	*
[Ref.: #66792]	Azovibrio restrictus DSM 23866	2526164512	draft	JGI IMG/M	1121035 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Azovibrio restrictus DSM 23866 DSM 23866 NCBI: GCA_000429665.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Azovibrio restrictus DSM 23866 DSM 23866 NCBI: GCA_000429665.1
[Ref.: #69480]	motile	yes	89.955	no
[Ref.: #69480]	flagellated	yes	85.061	no
[Ref.: #69480]	gram-positive	no	99.13	no
[Ref.: #69480]	anaerobic	no	71.371	no
[Ref.: #69480]	aerobic	no	77.781	no
[Ref.: #69480]	halophile	no	94.643	no
[Ref.: #69480]	spore-forming	no	92.743	no
[Ref.: #69480]	thermophile	no	98.282	no
[Ref.: #69480]	glucose-util	no	77.117	no
[Ref.: #69480]	glucose-ferment	no	88.214	no

Availability in culture collections External links

Culture collection no.

DSM 23866, LMG 22128, LMG 9099

SI-ID 13096

*

References

#17415

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23866

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83104

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13096.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.