Thauera phenylacetica (DSM 14743, LMG 26918, B4P)

Name: Thauera phenylacetica (DSM 14743, LMG 26918, B4P)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13918

Type strain

Strain Designation B4P

Culture col. no. DSM 14743 LMG 26918 B4P CIP 110163

NCBI tax ID(s) 164400

Special Collections DSMZ CIP

Links

Thauera phenylacetica B4P is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from anaerobic sewage sludge.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 87978

DSM 14743,LMG 24873,CIP 110163,LMG 26918

@ref 20215

Last LPSN update 2025-12-16 09:50:13

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Zoogloeaceae

Genus Thauera

Species Thauera phenylacetica

Full scientific name Thauera phenylacetica Mechichi et al. 2002

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
121797	negative	rod-shaped
125438	negative			98.985

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5438	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
5438	THAUERA AROMATICA MEDIUM (DSMZ Medium 586)	Medium recipe at MediaDive	Name: THAUERA AROMATICA MEDIUM (DSMZ Medium 586) Composition: K2HPO4 5.83251 g/l KNO3 1.97044 g/l KH2PO4 0.803941 g/l Na-benzoate 0.70936 g/l NH4Cl 0.522168 g/l MgSO4 x 7 H2O 0.197044 g/l CaCl2 x 2 H2O 0.0246305 g/l HCl 0.0246305 g/l FeCl2 x 4 H2O 0.0147783 g/l CoCl2 x 6 H2O 0.00187192 g/l MnCl2 x 4 H2O 0.000985222 g/l ZnCl2 0.000689655 g/l Na2MoO4 x 2 H2O 0.00035468 g/l p-Aminobenzoic acid 0.000246305 g/l alpha-lipoic acid 0.000246305 g/l Riboflavin 0.000246305 g/l Pantothenic acid 0.000246305 g/l Vitamin B12 0.000246305 g/l Thiamine-HCl x 2 H2O 0.000246305 g/l NiCl2 x 6 H2O 0.000236453 g/l Nicotine amide 0.000123153 g/l Nicotinic acid 0.000123153 g/l Folic acid 9.85222e-05 g/l Biotin 9.85222e-05 g/l H3BO3 5.91133e-05 g/l Pyridoxamine hydrochloride 4.92611e-05 g/l CuCl2 x 2 H2O 1.97044e-05 g/l Distilled water
32701	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
121797	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5438	positive	growth	30	mesophilic
32701	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
5438	aerobe
5438	anaerobe
121797	obligate aerobe
125439	obligate aerobe	90.1

Spore formation

@ref	Spore formation	Confidence
125439		90.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
121797	17632 ChEBI	nitrate	+	reduction
121797	16301 ChEBI	nitrite	+	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121797	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121797	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
121797	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
121797	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121797	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Sewage sludge
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
5438	anaerobic sewage sludge	Konstanz	Germany	DEU	Europe
121797	Environment, Sewage sludge	Konstanz	Germany	DEU	Europe	1991

Taxonmaps

69479

Global distribution of 16S sequence AJ315678 (>99% sequence identity) for Thauera from Microbeatlas

Aquatic Samples	491
Soil Samples	20
Animal Samples	31
Plant Samples	6
Total Samples	548

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5438	1	Risk group (German classification) According to TRBA 466
121797	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
66792	ASM31022v1 assembly for Thauera phenylacetica B4P	contig	GCA_000310225	1234382.3	2531839276	1234382

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Thauera sp. B4P 16S rRNA gene, strain B4P	AJ315678	1511		1234382

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thauera phenylacetica B4P
NCBI: GCA_000310225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.10	no
125439	gram_stain	BacteriaNetⓘ	negative	72.10	no
125439	motility	BacteriaNetⓘ	yes	70.10	no
125439	spore_formation	BacteriaNetⓘ	no	90.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thauera phenylacetica B4P
PATRIC: 1234382.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.99	no
125438	anaerobic	anaerobicⓘ	no	76.15	no
125438	spore-forming	spore-formingⓘ	no	85.73	no
125438	aerobic	aerobicⓘ	yes	52.86	no
125438	thermophilic	thermophileⓘ	no	94.04	no
125438	flagellated	motile2+ⓘ	yes	83.22	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thauera propionica sp. nov., isolated from downstream sediment sample of the river Ganges, Kanpur, India.	Pal D, Bhardwaj A, Sudan SK, Kaur N, Kumari M, Bisht B, Vyas B, Krishnamurthi S, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002508	2017

References

#5438	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14743
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32701	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121797	Collection of Institut Pasteur ; Curators of the CIP; CIP 110163
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Thauera phenylacetica (DSM 14743, LMG 26918, B4P)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000310225

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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