Name: Ornithinibacillus contaminans DSM 22953
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1383

Type strain:

Species: Ornithinibacillus contaminans

Culture col. no.: DSM 22953, CCUG 53201

Strain history: <- P. Kämpfer, Univ. Giessen, Germany; CCUG 53201

NCBI tax ID(s): 694055 (species)

SI-ID 370878

CCUG 53201, DSM 22953

Special Collections

Section

Ornithinibacillus contaminans DSM 22953 is an obligate aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from contaminant from a blood sample of a 75-year-old woman.

colony-forming
Gram-positive
rod-shaped
spore-forming
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Ornithinibacillus*
	Species	**Ornithinibacillus contaminans**
	Full Scientific Name (LPSN)	Ornithinibacillus contaminans Kämpfer et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #23015]	Gram stain	positive

[Ref.: #23015]	Cell length	2.0-3.0 µm

[Ref.: #23015]	Cell width	0.8-1.0 µm

[Ref.: #23015]	Cell shape	rod-shaped

[Ref.: #23015]	Motility	no

[Ref.: #23015]	Colony color	beige
[Ref.: #23015]	Colony shape	circular

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16631]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #16631]

Culture medium growth

[Ref.: #16631]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16631]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #16631]		growth	28 °C
[Ref.: #23015]		growth	20.0-45.0 °C
[Ref.: #23015]	no	growth	10.0 °C
[Ref.: #23015]	no	growth	50.0 °C
[Ref.: #23015]	no	growth	5.0 °C
[Ref.: #23015]		growth	40.0 °C
[Ref.: #23015]		growth	37.0 °C
[Ref.: #23015]		optimum	30.0 °C
[Ref.: #59829]		growth	37 °C

	Kind of pH		pH
[Ref.: #23015]		optimum	7.0-9.0
[Ref.: #23015]		growth	6.5-9.5
[Ref.: #23015]	no	growth	5.7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23015]	Oxygen tolerance	obligate aerobe
[Ref.: #59829]	Oxygen tolerance	microaerophile

[Ref.: #23015]	Spore description	central
[Ref.: #23015]	Type of spore	endospore
[Ref.: #23015]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23015]		NaCl		growth	<6.0	%(w/v)

[Ref.: #16631]	Murein short key	A21.04
[Ref.: #16631]	Murein types	A4ß L-Orn-D-Asp
[Ref.: #23015]	Murein short key	A21.04
[Ref.: #23015]	Murein types	A4ß L-Orn-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23015]	D-glucose ChEBI	+	builds acid from
[Ref.: #23015]	D-mannitol ChEBI	+	builds acid from
[Ref.: #23015]	D-xylose ChEBI	+	builds acid from

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23015]		catalase	+	1.11.1.6
[Ref.: #23015]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16631]	Sample type/isolated from	contaminant from a blood sample of a 75-year-old woman
[Ref.: #16631]	Geographic location (country and/or sea, region)	Göteborg
[Ref.: #16631]	Country	Sweden
[Ref.: #16631]	Country ISO 3 Code	SWE
[Ref.: #16631]	Continent	Europe

[Ref.: #59829]	Sample type/isolated from	Human blood,75-yr-old woman
[Ref.: #59829]	Sampling date	2006-07-02
[Ref.: #59829]	Geographic location (country and/or sea, region)	Borås
[Ref.: #59829]	Country	Sweden
[Ref.: #59829]	Country ISO 3 Code	SWE
[Ref.: #59829]	Continent	Europe

[Ref.: #23015]	Enrichment culture	tryptone soy agar (TSA; Oxoid)
[Ref.: #23015]	Enrichment culture temperature	30.0 ̊C
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Contaminant
#Infection	#Patient	-
#Host Body Product	#Fluids	#Blood
#Host	#Human	#Female

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN597064 (>99% sequence identity) for Ornithinibacillus contaminans subclade from Microbeatlas

Aquatic Samples	4
Soil Samples	15
Animal Samples	24
Plant Samples
Total Samples	43

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16631]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16631]	Ornithinibacillus contaminans partial 16S rRNA gene, type strain CCUG 53201T	FN597064	1254	GenBank ENA	694055 tax ID
[Ref.: #20218]	Ornithinibacillus contaminans strain CCUG 53201 16S ribosomal RNA gene, partial sequence	KF425516	1524	GenBank ENA	694055 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ornithinibacillus contaminans DSM 22953	GCA_001038425	contig	GenBank ENA	694055 tax ID	*
[Ref.: #66792]	Ornithinibacillus contaminans strain DSM 22953	694055.4	wgs	PATRIC	694055 tax ID	*
[Ref.: #66792]	Ornithinibacillus contaminans DSM 22953	2645727623	draft	JGI IMG/M	694055 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ornithinibacillus contaminans strain DSM 22953 PATRIC: 694055.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ornithinibacillus contaminans strain DSM 22953 PATRIC: 694055.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	82.501	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.035	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.621	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.434	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	73.065	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	85.553	no

Availability in culture collections External links

[Ref.: #16631]

Culture collection no.

DSM 22953, CCUG 53201

[Ref.: #71034]

SI-ID 370878

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Two novel species of the family Bacillaceae: Oceanobacillus piezotolerans sp. nov. and Bacillus piezotolerans sp. nov., from deep-sea sediment samples of Yap Trench.	Yu L, Tang X, Wei S, Qiu Y, Xu X, Xu G, Wang Q, Yang Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.003559	2019	*
Phylogeny	Pseudogracilibacillus endophyticus sp. nov., a moderately thermophilic and halophilic species isolated from plant root.	Park J, Kim MK, Yun BR, Han JH, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.002475	2017	*
Phylogeny	Comparative genomic study of three species within the genus Ornithinibacillus, reflecting the adaption to different habitats.	Jiang XW, Cheng H, Zheng BW, Li A, Lv LX, Ling ZX, Yan R, Jiang HY, Cheng YW, Gu SL, Li LJ	Gene	10.1016/j.gene.2015.12.025	2015	*
Phylogeny	Ornithinibacillus contaminans sp. nov., an endospore-forming species.	Kampfer P, Falsen E, Lodders N, Langer S, Busse HJ, Schumann P	Int J Syst Evol Microbiol	10.1099/ijs.0.021337-0	2010	*

References

#16631

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22953

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23015

P. Kämpfer,E. Falsen,N. Lodders,S. Langer,H.-J. Busse,P. Schumann: Ornithinibacillus contaminans sp. nov., an endospore-forming species. IJSEM 60: 2930 - 2934 2010 ( DOI 10.1099/ijs.0.021337-0 , PubMed 20118298 )

#59829 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53201

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71034

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370878.1 )

* These data were automatically processed and therefore are not curated

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Ornithinibacillus contaminans strain DSM 22953

Ornithinibacillus contaminans strain DSM 22953

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