Name: Ornithinibacillus californiensis MB-9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1382

Type strain:

Species: Ornithinibacillus californiensis

Strain Designation: MB-9

Culture col. no.: DSM 16628, CCM 7237, CIP 109288

Strain history: CIP <- 2006, CCM <- H.J. Busse, Vienna Univ., Vienna, Austria <- R. Mayr, Munich Univ., Munich, Germany <- B.M. Tebo: strain MB-9

NCBI tax ID(s): 161536 (species)

SI-ID 139328

CCM 7237, DSM 16628, CIP 109288

Section

Ornithinibacillus californiensis MB-9 is an obligate aerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from marine sediment.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Ornithinibacillus*
	Species	**Ornithinibacillus californiensis**
	Full Scientific Name (LPSN)	Ornithinibacillus californiensis Mayr et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #23014]	Gram stain	positive
[Ref.: #117104]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23014]	Cell length	2.0-6.0 µm

[Ref.: #23014]	Cell width	0.4 µm

[Ref.: #23014]	Cell shape	rod-shaped
[Ref.: #117104]	Cell shape	rod-shaped

[Ref.: #23014]	Motility	yes
[Ref.: #117104]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.471

[Ref.: #23014]	Type of hemolysis	alpha/beta
[Ref.: #23014]	Hemolysis ability	1
[Ref.: #23014]	Colony size	5.0 mm
[Ref.: #23014]	Colony color	slightly brownish/orange
[Ref.: #23014]	Colony shape	circular
[Ref.: #23014]	Incubation period	11 days
[Ref.: #23014]	Cultivation medium used	trypticase soy agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6532]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6532]

Culture medium growth

[Ref.: #6532]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6532]

Culture medium composition

expand / minimize

[Ref.: #23014]

Culture medium

trypticase soy agar

[Ref.: #23014]

Culture medium growth

[Ref.: #37501]

Culture medium

MEDIUM 682 - for Ornithinibacillus californiensis

[Ref.: #37501]

Culture medium growth

[Ref.: #117104]

Culture medium

CIP Medium 682

[Ref.: #117104]

Culture medium growth

[Ref.: #117104]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6532]		growth	30 °C
[Ref.: #23014]		growth	10.0 °C
[Ref.: #23014]		growth	37.0 °C
[Ref.: #23014]	no	growth	7.0 °C
[Ref.: #23014]	no	growth	42.0 °C
[Ref.: #23014]		optimum	30.0 °C
[Ref.: #37501]		growth	30 °C

[Ref.: #6532]	Temperature range	mesophilic
[Ref.: #23014]	Temperature range	psychrophilic
[Ref.: #23014]	Temperature range	mesophilic
[Ref.: #23014]	Temperature range	psychrophilic
[Ref.: #23014]	Temperature range	thermophilic
[Ref.: #23014]	Temperature range	mesophilic
[Ref.: #37501]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23014]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23014]	Oxygen tolerance	obligate aerobe
[Ref.: #117104]	Oxygen tolerance	obligate aerobe

[Ref.: #23014]	Spore description	oval,terminal,in swollen sporangia ((width approx. 0.8 mm) appears racket-shaped)
[Ref.: #23014]	Type of spore	endospore
[Ref.: #23014]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #23014]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23014]		NaCl		growth	0.5-12.0	%(w/v)
[Ref.: #23014]		NaCl		optimum	0.5-8.0	%

[Ref.: #6532]	Murein short key	A21.04
[Ref.: #6532]	Murein types	A4ß L-Orn-D-Asp
[Ref.: #23014]	Murein short key	A21.04
[Ref.: #23014]	Murein types	A4ß L-Orn-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23014]	(S)-lactate ChEBI	-	respiration
[Ref.: #23014]	2,3-butanediol ChEBI	-	respiration
[Ref.: #23014]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23014]	2-deoxyadenosine ChEBI	-	respiration
[Ref.: #23014]	2-hydroxybutyrate ChEBI	-	respiration
[Ref.: #23014]	2-oxopentanoate ChEBI	+	respiration
[Ref.: #23014]	3-hydroxybutyrate ChEBI	+	respiration
[Ref.: #23014]	3-O-methyl-D-glucose ChEBI	-	respiration
[Ref.: #23014]	4-hydroxybutyrate ChEBI	-	respiration
[Ref.: #23014]	4-hydroxyphenylacetic acid ChEBI	-	respiration
[Ref.: #23014]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #23014]	acetate ChEBI	+	respiration
[Ref.: #23014]	adenosine ChEBI	-	respiration
[Ref.: #23014]	alpha-cyclodextrin ChEBI	-	respiration
[Ref.: #23014]	alpha-D-glucose ChEBI	-	respiration
[Ref.: #23014]	alpha-lactose ChEBI	-	respiration
[Ref.: #23014]	amp ChEBI	-	respiration
[Ref.: #23014]	amygdalin ChEBI	-	builds acid from
[Ref.: #23014]	amygdalin ChEBI	-	respiration
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	arbutin ChEBI	-	builds acid from
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23014]	cellobiose ChEBI	-	builds acid from
[Ref.: #23014]	cellobiose ChEBI	-	respiration
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-alanine ChEBI	-	respiration
[Ref.: #23014]	D-arabinose ChEBI	-	builds acid from
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-arabitol ChEBI	-	builds acid from
[Ref.: #23014]	D-arabitol ChEBI	-	respiration
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-fructose ChEBI	-	respiration
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-fructose 6-phosphate ChEBI	-	respiration
[Ref.: #23014]	D-fucose ChEBI	-	builds acid from
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-galactose ChEBI	-	respiration
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-galacturonic acid ChEBI	-	respiration
[Ref.: #23014]	D-gluconate ChEBI	-	respiration
[Ref.: #23014]	D-glucose ChEBI	+	builds acid from
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-glucose 6-phosphate ChEBI	-	respiration
[Ref.: #23014]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-malate ChEBI	-	respiration
[Ref.: #23014]	D-mannitol ChEBI	-	respiration
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-mannose ChEBI	-	builds acid from
[Ref.: #23014]	D-mannose ChEBI	-	respiration
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-psicose ChEBI	-	respiration
[Ref.: #23014]	D-ribose ChEBI	-	respiration
[Ref.: #23014]	D-sorbitol ChEBI	-	respiration
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-tagatose ChEBI	-	respiration
[Ref.: #23014]	D-tagatose ChEBI	+	builds acid from
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	D-xylose ChEBI	-	builds acid from
[Ref.: #23014]	D-xylose ChEBI	-	respiration
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	erythritol ChEBI	-	builds acid from
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23014]	galactitol ChEBI	-	builds acid from
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	galactose ChEBI	-	builds acid from
[Ref.: #23014]	gentiobiose ChEBI	-	builds acid from
[Ref.: #23014]	gentiobiose ChEBI	-	respiration
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	gluconate ChEBI	-	builds acid from
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	glucose 1-phosphate ChEBI	-	respiration
[Ref.: #23014]	glycerol ChEBI	+	builds acid from
[Ref.: #23014]	glycogen ChEBI	-	builds acid from
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	glycyl-l-glutamate ChEBI	-	respiration
[Ref.: #23014]	inosine ChEBI	-	respiration
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	L-alaninamide ChEBI	-	respiration
[Ref.: #23014]	L-alanylglycine ChEBI	-	respiration
[Ref.: #23014]	L-arabinose ChEBI	-	builds acid from
[Ref.: #23014]	L-arabinose ChEBI	-	respiration
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	L-asparagine ChEBI	-	respiration
[Ref.: #23014]	L-fucose ChEBI	-	builds acid from
[Ref.: #23014]	L-fucose ChEBI	-	respiration
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	L-glutamate ChEBI	-	respiration
[Ref.: #23014]	L-malate ChEBI	+/-	respiration
[Ref.: #23014]	L-rhamnose ChEBI	-	respiration
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	L-xylose ChEBI	-	builds acid from
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	lactamide ChEBI	-	respiration
[Ref.: #23014]	lactose ChEBI	-	builds acid from
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	lactulose ChEBI	-	respiration
[Ref.: #23014]	maltose ChEBI	-	respiration
[Ref.: #23014]	maltose ChEBI	+	builds acid from
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23014]	maltotriose ChEBI	-	respiration
[Ref.: #23014]	mannan ChEBI	-	respiration
[Ref.: #23014]	mannitol ChEBI	-	builds acid from
[Ref.: #23014]	melezitose ChEBI	-	builds acid from
[Ref.: #23014]	melezitose ChEBI	-	respiration
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	melibiose ChEBI	-	builds acid from
[Ref.: #23014]	melibiose ChEBI	-	respiration
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	methyl (R)-lactate ChEBI	-	respiration
[Ref.: #23014]	methyl alpha-D-galactoside ChEBI	-	respiration
[Ref.: #23014]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #23014]	methyl alpha-D-glucopyranoside ChEBI	-	respiration
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #23014]	methyl alpha-D-mannoside ChEBI	-	respiration
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	methyl beta-D-galactoside ChEBI	-	respiration
[Ref.: #23014]	methyl beta-D-glucopyranoside ChEBI	-	respiration
[Ref.: #23014]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	methyl pyruvate ChEBI	+/-	respiration
[Ref.: #23014]	monomethyl succinate ChEBI	-	respiration
[Ref.: #23014]	myo-inositol ChEBI	-	builds acid from
[Ref.: #23014]	myo-inositol ChEBI	-	respiration
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	N-acetyl-beta-D-mannosamine ChEBI	-	respiration
[Ref.: #23014]	N-acetyl-L-glutamate ChEBI	-	respiration
[Ref.: #23014]	N-acetylglucosamine ChEBI	-	respiration
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	nitrate ChEBI	-	reduction
[Ref.: #117104]	nitrate ChEBI	-	reduction
[Ref.: #117104]	nitrite ChEBI	-	reduction
[Ref.: #23014]	palatinose ChEBI	-	respiration
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	putrescine ChEBI	-	respiration
[Ref.: #23014]	pyruvate ChEBI	+	respiration
[Ref.: #23014]	raffinose ChEBI	-	builds acid from
[Ref.: #23014]	raffinose ChEBI	-	respiration
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	rhamnose ChEBI	-	builds acid from
[Ref.: #23014]	ribitol ChEBI	-	builds acid from
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	ribose ChEBI	+	builds acid from
[Ref.: #23014]	salicin ChEBI	+	builds acid from
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23014]	sedoheptulosan ChEBI	-	respiration
[Ref.: #23014]	sorbitol ChEBI	-	builds acid from
[Ref.: #23014]	stachyose ChEBI	-	respiration
[Ref.: #23014]	starch ChEBI	-	degradation
[Ref.: #23014]	starch ChEBI	+	builds acid from
[Ref.: #23014]	succinamate ChEBI	-	respiration
[Ref.: #23014]	succinate ChEBI	-	respiration
[Ref.: #23014]	sucrose ChEBI	-	respiration
[Ref.: #23014]	sucrose ChEBI	+	builds acid from
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23014]	thymidine ChEBI	-	respiration
[Ref.: #23014]	thymidine 5'-monophosphate ChEBI	-	respiration
[Ref.: #23014]	trehalose ChEBI	+	builds acid from
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23014]	turanose ChEBI	-	builds acid from
[Ref.: #23014]	turanose ChEBI	-	respiration
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23014]	uridine 5'-monophosphate ChEBI	-	respiration
[Ref.: #23014]	xylitol ChEBI	-	builds acid from
[Ref.: #23014]	xylitol ChEBI	-	respiration
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23014]	acetoin ChEBI	no
[Ref.: #23014]	hydrogen sulfide ChEBI	no
[Ref.: #23014]	indole ChEBI	no
[Ref.: #117104]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #23014]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23014]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #23014]	catalase	+	1.11.1.6
[Ref.: #117104]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #23014]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #23014]	gelatinase	+
[Ref.: #23014]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #23014]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #23014]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #117104]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #23014]	tryptophan deaminase	-	4.1.99.1
[Ref.: #23014]	urease	-	3.5.1.5
[Ref.: #117104]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #117104]	11513	not determinedn.d.	+/-	-	-	-	+/-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	-	+	+	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117104]	11769	-	+	+	-	-	+	-	-	-	+	-	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6532]	Sample type/isolated from	marine sediment
[Ref.: #6532]	Geographic location (country and/or sea, region)	Mission Bay, San Diego
[Ref.: #6532]	Country	USA
[Ref.: #6532]	Country ISO 3 Code	USA
[Ref.: #6532]	Continent	North America

[Ref.: #23014]	Sample type/isolated from	surface sediment samples collected at the waterline from the shore
[Ref.: #23014]	Enrichment culture	Mn(II)-containing K agar

[Ref.: #117104]	Sample type/isolated from	Environment, Marine sediments
[Ref.: #117104]	Geographic location (country and/or sea, region)	Mission bay, San Diego, California
[Ref.: #117104]	Country	United States of America
[Ref.: #117104]	Country ISO 3 Code	USA
[Ref.: #117104]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6532]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117104]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6532]	Ornithinibacillus californiensis strain MB-9 16S ribosomal RNA gene, partial sequence	AF326365	1528	ENA	161536 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ornithinibacillus californiensis DSM 16628	GCA_001038485	contig	GenBank	161536 tax ID	*
[Ref.: #66792]	Ornithinibacillus californiensis strain DSM 16628	161536.5	wgs	PATRIC	161536 tax ID	*
[Ref.: #66792]	Ornithinibacillus californiensis DSM 16628	2627854193	draft	JGI IMG/M	161536 tax ID	*

[Ref.: #6532]	GC-content	40.8 mol%
[Ref.: #23014]	GC-content	40.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ornithinibacillus californiensis strain DSM 16628 PATRIC: 161536.5
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ornithinibacillus californiensis strain DSM 16628 PATRIC: 161536.5
[Ref.: #69480]	motile	yes	89.775	no
[Ref.: #69480]	gram-positive	yes	88.23	yes
[Ref.: #69480]	anaerobic	no	98.843	yes
[Ref.: #69480]	aerobic	yes	92.795	no
[Ref.: #69480]	halophile	yes	82.595	no
[Ref.: #69480]	spore-forming	yes	91.772	yes
[Ref.: #69480]	thermophile	no	98.958	no
[Ref.: #69480]	glucose-util	yes	78.592	yes
[Ref.: #69480]	flagellated	yes	83.022	no
[Ref.: #69480]	glucose-ferment	no	89.248	no

Availability in culture collections External links

[Ref.: #6532]

Culture collection no.

DSM 16628, CCM 7237, CIP 109288

[Ref.: #71033]

SI-ID 139328

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comparative genomic study of three species within the genus Ornithinibacillus, reflecting the adaption to different habitats.	Jiang XW, Cheng H, Zheng BW, Li A, Lv LX, Ling ZX, Yan R, Jiang HY, Cheng YW, Gu SL, Li LJ	Gene	10.1016/j.gene.2015.12.025	2015	*
Phylogeny	Salinibacillus xinjiangensis sp. nov., a halophilic bacterium from a hypersaline lake.	Yang N, Ren B, Liu ZH, Dai HQ, Wang J, Zhou YG, Song FH, Zhang LX	Int J Syst Evol Microbiol	10.1099/ijs.0.053306-0	2013	*
Phylogeny	Ornithinibacillus contaminans sp. nov., an endospore-forming species.	Kampfer P, Falsen E, Lodders N, Langer S, Busse HJ, Schumann P	Int J Syst Evol Microbiol	10.1099/ijs.0.021337-0	2010	*
Phylogeny	Ornithinibacillus gen. nov., with the species Ornithinibacillus bavariensis sp. nov. and Ornithinibacillus californiensis sp. nov.	Mayr R, Busse HJ, Worliczek HL, Ehling-Schulz M, Scherer S	Int J Syst Evol Microbiol	10.1099/ijs.0.64038-0	2006	*

References

#6532

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16628

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23014

R. Mayr,H.-J. Busse,H. L. Worliczek,M. Ehling-Schulz,S. Scherer: Ornithinibacillus gen. nov., with the species Ornithinibacillus bavariensis sp. nov. and Ornithinibacillus californiensis sp. nov.. IJSEM 56: 1383 - 1389 2006 ( DOI 10.1099/ijs.0.64038-0 , PubMed 16738118 )

#37501 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71033

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID139328.1 )

#117104 Collection of Institut Pasteur ; Curators of the CIP; CIP 109288
* These data were automatically processed and therefore are not curated

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Ornithinibacillus californiensis strain DSM 16628

Ornithinibacillus californiensis strain DSM 16628

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