Name: Roseinatronobacter thiooxidans DSM 13087
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13754

Type strain:

Species: Roseinatronobacter thiooxidans

Culture col. no.: DSM 13087, ALG 1

Strain history: <- D. Y. Sorokin; ALG 1

NCBI tax ID(s): 121821 (species)

SI-ID 100934

DSM 13087

Special Collections

DSMZ

Section

Roseinatronobacter thiooxidans DSM 13087 is a Gram-negative bacterium that was isolated from microbial mat in soda lake.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Roseinatronobacter*
	Species	**Roseinatronobacter thiooxidans**
	Full Scientific Name (LPSN)	Roseinatronobacter thiooxidans Sorokin et al. 2000

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4902]

Culture medium

ROSEINATRONOBACTER MEDIUM (DSMZ Medium 928)

[Ref.: #4902]

Culture medium growth

[Ref.: #4902]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4902]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4902]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4902]	Sample type/isolated from	microbial mat in soda lake
[Ref.: #4902]	Geographic location (country and/or sea, region)	Siberia, Lake Gorbunka (Burjatia)
[Ref.: #4902]	Country	Russia
[Ref.: #4902]	Country ISO 3 Code	RUS
[Ref.: #4902]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Microbial community	#Microbial mat
#Condition	#Alkaline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4902]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Roseinatronobacter thiooxidans 16S ribosomal RNA, partial sequence	AF249749	1347	GenBank ENA	121821 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Roseinatronobacter thiooxidans DSM 13087	GCA_003254005	scaffold	GenBank ENA	121821 tax ID	*
[Ref.: #66792]	Roseinatronobacter thiooxidans strain DSM 13087	121821.4	wgs	PATRIC	121821 tax ID	*
[Ref.: #66792]	Roseinatronobacter thiooxidans DSM 13087	2593339280	draft	JGI IMG/M	121821 tax ID	*

[Ref.: #4902]

GC-content

61.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Roseinatronobacter thiooxidans DSM 13087 NCBI: GCA_003254005.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.861	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.691	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.767	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.108	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	55.423	no

Availability in culture collections External links

[Ref.: #4902]

Culture collection no.

DSM 13087, ALG 1

[Ref.: #82935]

SI-ID 100934

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhabdonatronobacter sediminivivens gen. nov., sp. nov. isolated from the sediment of Hutong Qagan Soda Lake.	Zhou H, Yang M, Xue Q, Kumar S, Zhang S, Zhou J, Zhao D, Xiang H	Arch Microbiol	10.1007/s00203-022-02758-4	2022	*
Phylogeny	Plastorhodobacter daqingensis gen. nov., sp. nov.: a non-phototrophic bacterium isolated from Daqing Oilfield.	Xie BS, Lv XL, Cai M, Tang YQ, Wang YN, Cui HL, Liu XY, Tan Y, Wu XL	Curr Microbiol	10.1007/s00284-014-0769-3	2015	*
Phylogeny	[Roseinatronobacter thiooxidans Gen. Nov., sp. Nov., a new alkaliphilic aerobic bacteriochlorophyll-alpha-containing bacteria from a soda lake].	Sorokin DIu, Turova TP, Kuznetsov BB, Briantseva IA, Gorlenko VM	Mikrobiologiia		2000	*

References

#4902

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13087

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82935

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100934.1 )

* These data were automatically processed and therefore are not curated

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