Roseinatronobacter thiooxidans (DSM 13087, ALG 1)

Name: Roseinatronobacter thiooxidans (DSM 13087, ALG 1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13754

Type strain

Culture col. no. DSM 13087 ALG 1

NCBI tax ID(s) 121821

Special Collections DSMZ

History <- D. Y. Sorokin; ALG 1

Links

Roseinatronobacter thiooxidans DSM 13087 is a bacterium that was isolated from microbial mat in soda lake.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 100934

DSM 13087

@ref 20215

Last LPSN update 2026-02-09 11:21:14

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Roseinatronobacter

Species Roseinatronobacter thiooxidans

Full scientific name Roseinatronobacter thiooxidans Sorokin et al. 2000

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.5
125439	negative	98.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4902	ROSEINATRONOBACTER MEDIUM (DSMZ Medium 928)		Medium recipe at MediaDive	Name: ROSEINATRONOBACTER MEDIUM (DSMZ Medium 928) Composition: K2HPO4 25.0 g/l Agar 20.0 g/l Na2CO3 11.0 g/l NaHCO3 4.0 g/l NaCl 2.5 g/l Sodium acetate 0.8 g/l Yeast extract 0.5 g/l Peptone 0.5 g/l KNO3 0.25 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4902	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		97.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Microbial community	#Microbial mat
#Condition	#Alkaline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4902	microbial mat in soda lake	Siberia, Lake Gorbunka (Burjatia)	Russia	RUS	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4902	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM325400v1 assembly for Roseinatronobacter thiooxidans DSM 13087	scaffold	GCA_003254005	121821.4	2593339280	121821	66.54

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Roseinatronobacter thiooxidans 16S ribosomal RNA, partial sequence	AF249749	1347		121821

GC content

4902

GC-content (mol%)61.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Roseinatronobacter thiooxidans DSM 13087
NCBI: GCA_003254005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.50	no
125439	motility	BacteriaNetⓘ	yes	73.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	55.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Roseinatronobacter thiooxidans DSM 13087
NCBI: GCA_003254005.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	88.86	no
125438	aerobic	aerobicⓘ	yes	75.69	no
125438	spore-forming	spore-formingⓘ	no	88.77	no
125438	thermophilic	thermophileⓘ	no	97.11	no
125438	flagellated	motile2+ⓘ	yes	55.42	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Seasonal Variations of the Nebraska Salt Marsh Microbiome: Environmental Impact, Antibiotic Resistance, and Unique Species.	Stock EK, Rota K, Dunn B, Vasquez M, Hernandez-Velazquez D, Lespes A, Bosmans S, Smith JC, Kyndt JA.	Microorganisms	10.3390/microorganisms13102369	2025
	Biodiversity and culture of prokaryotes inhabiting haloalkaline and meromictic Soap Lake, Washington, USA.	Vanderlaan OJM, Simmons EM, Damman KM, Waddell MD, Ross SF, Armstrong AD, Walker ML, Sattley SJ, Sattley WM.	Front Microbiol	10.3389/fmicb.2025.1620605	2025
Metabolism	[Comparative study of metabolism of the purple photosynthetic bacteria grown in the light and in the dark under anaerobic and aerobic conditions].	Keppen OI, Krasil'nikova EN, Lebedeva NV, Ivanovskii RN.	Mikrobiologiia	10.1134/s0026261713050056	2013
	Genomic Analysis of the Evolution of Phototrophy among Haloalkaliphilic Rhodobacterales.	Kopejtka K, Tomasch J, Zeng Y, Tichy M, Sorokin DY, Koblizek M.	Genome Biol Evol	10.1093/gbe/evx141	2017
Metabolism	[Photosynthetic activity and components of the electron transport chain in the aerobic bacteriochlorophyll A-containing bacterium Roseinatronobacter thiooxidans].	Stadnichuk IN, Ianiushin MF, Boichenko VA, Lukashev EP, Boldareva EN, Solov'ev AA, Gorlenko VM.	Mikrobiologiia	10.1134/s0026261709010020	2009
Metabolism	A new facultatively autotrophic hydrogen- and sulfur-oxidizing bacterium from an alkaline environment.	Sorokin DY, Tourova TP, Kuenen JG.	Extremophiles	10.1007/pl00010715	2000
Genetics	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.	Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M.	Front Microbiol	10.3389/fmicb.2020.00468	2020
Phylogeny	[Roseinatronobacter thiooxidans Gen. Nov., sp. Nov., a new alkaliphilic aerobic bacteriochlorophyll-alpha-containing bacteria from a soda lake].	Sorokin DIu, Turova TP, Kuznetsov BB, Briantseva IA, Gorlenko VM	Mikrobiologiia		2000
	Genome-based analysis of the family Paracoccaceae and description of Ostreiculturibacter nitratireducens gen. nov., sp. nov., isolated from an oyster farm on a tidal flat.	Huang Z, Li M, Oren A, Lai Q.	Front Microbiol	10.3389/fmicb.2024.1376777	2024
Phylogeny	[The new bacteriochlorophyll a-containing bacterium Roseinatronobacter monicus sp. nov. from the hypersaline soda Mono Lake (California, United States)].	Boldareva EN, Briantseva IA, Tsapin A, Nelson K, Sorokin DIu, Turova TP, Boichenko VA, Stadnichuk IN, Gorlenko VM.	Mikrobiologiia	10.1134/s0026261707010122	2007
Phylogeny	Rhabdonatronobacter sediminivivens gen. nov., sp. nov. isolated from the sediment of Hutong Qagan Soda Lake.	Zhou H, Yang M, Xue Q, Kumar S, Zhang S, Zhou J, Zhao D, Xiang H	Arch Microbiol	10.1007/s00203-022-02758-4	2022
Phylogeny	Plastorhodobacter daqingensis gen. nov., sp. nov.: a non-phototrophic bacterium isolated from Daqing Oilfield.	Xie BS, Lv XL, Cai M, Tang YQ, Wang YN, Cui HL, Liu XY, Tan Y, Wu XL	Curr Microbiol	10.1007/s00284-014-0769-3	2015

References

#4902	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13087
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Roseinatronobacter thiooxidans (DSM 13087, ALG 1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003254005

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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