Hymenobacter flocculans (CIP 110139, LMG 25699, UCCCB28)

Name: Hymenobacter flocculans (CIP 110139, LMG 25699, UCCCB28)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 136791

Type strain

Strain Designation A2-50, A2-50A

Culture col. no. CIP 110139 LMG 25699 UCCCB28 A2-50 A2-50A

NCBI tax ID(s) 759411

Special Collections CIP UCCCB

History Chung A.P. University of Coimbra CIP <- 2010, P. Morais, FCTUC, Da Vida, Coimbra, Portugal : strain A2-50A

Links

Hymenobacter flocculans A2-50 is a mesophilic, Gram-negative, rod-shaped prokaryote of the family Hymenobacteraceae.

Gram-negative rod-shaped mesophilic 16S sequence

Name and taxonomic classification

SI-ID 369526

LMG 25699,CIP 110139

@ref 20215

Last LPSN update 2026-02-09 11:32:44

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Hymenobacteraceae

Genus Hymenobacter

Species Hymenobacter flocculans

Full scientific name Hymenobacter flocculans Chung et al. 2011

Synonyms (1)

"Siccationidurans flocculans"

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
36431	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
36431	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
36431	CIP Medium 566			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
36431	positive	growth	30	mesophilic
67772	positive	minimum	4	psychrophilic
67772	positive	optimum	25	mesophilic
67772	positive	maximum	40	thermophilic

Culture pH

@ref	Ability	Type	PH
67772	positive	optimum	6.0-6.5

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
36431	17632 ChEBI	nitrate	-	reduction
36431	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
36431	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
36431	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
36431	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
36431	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
36431	-	+	+	+	-	+	+	+	-	-	+	+	-	+	-	+	+	+	+	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
36431			Central	Portugal	PRT	Europe
67772	Acidic water sample (pH 5)	2008	Viseu, Urgeiriça	Portugal	PRT	Europe
36431	Uranium, mine		Central	Portugal	PRT	Europe	2008

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
67772	1
36431	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67772	Hymenobacter flocculans strain A2-50A 16S ribosomal RNA gene, partial sequence	HM032897	1501		759411

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter perfusus sp. nov., Hymenobacter flocculans sp. nov. and Hymenobacter metalli sp. nov. three new species isolated from an uranium mine waste water treatment system.	Chung AP, Lopes A, Nobre MF, Morais PV	Syst Appl Microbiol	10.1016/j.syapm.2010.09.002	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36431	Collection of Institut Pasteur ; Curators of the CIP; CIP 110139
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Hymenobacter flocculans (CIP 110139, LMG 25699, UCCCB28)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media