Name: Hymenobacter metalli A2-91
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 136792

Type strain:

Species: Hymenobacter metalli

Strain Designation: A2-91

Culture col. no.: CIP 110140, LMG 25700, KACC 17381, UCCCB29

Strain history: CIP <- 2010, FCTUC, Da Vida, Coimbra, Portugal: strain A2-91

NCBI tax ID(s): 1433843 (species)

SI-ID 369477

LMG 25700, CIP 110140, KACC 17381

Section

Hymenobacter metalli A2-91 is a mesophilic, Gram-negative, rod-shaped bacterium of the family Hymenobacteraceae.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter metalli**
	Full Scientific Name (LPSN)	Hymenobacter metalli Chung et al. 2011

Synonym

"Siccationidurans metalli"

Information on morphological and physiological properties Morphology

[Ref.: #36432]	Gram stain	negative

[Ref.: #36432]	Cell shape	rod-shaped

[Ref.: #36432]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36432]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #36432]

Culture medium growth

[Ref.: #36432]

Culture medium composition

expand / minimize

[Ref.: #36432]

Culture medium

CIP Medium 566

[Ref.: #36432]

Culture medium growth

[Ref.: #36432]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #36432]	growth	30 °C
[Ref.: #67772]	minimum	4 °C
[Ref.: #67772]	optimum	25 °C
[Ref.: #67772]	maximum	30 °C

[Ref.: #36432]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	psychrophilic
[Ref.: #67772]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #67772]			optimum	6.0-6.5

Information on physiology and metabolism Physiology and metabolism

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #36432]		nitrate ChEBI	-	reduction
[Ref.: #36432]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #36432]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #36432]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #36432]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #36432]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #36432]	12390	-	+	+	+	-	+	+	+	-	-	+	+	-	+	-	-	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67772]	Sample type/isolated from	Acidic water sample (pH 5)
[Ref.: #67772]	Sampling date	2008
[Ref.: #67772]	Geographic location (country and/or sea, region)	Viseu, Urgeiriça
[Ref.: #67772]	Country	Portugal
[Ref.: #67772]	Country ISO 3 Code	PRT
[Ref.: #67772]	Continent	Europe

[Ref.: #36432]	Sample type/isolated from	Uranium, mine
[Ref.: #36432]	Geographic location (country and/or sea, region)	Urgeirica
[Ref.: #36432]	Country	Portugal
[Ref.: #36432]	Country ISO 3 Code	PRT
[Ref.: #36432]	Continent	Europe
[Ref.: #36432]	Isolation date	2008

[Ref.: #36432]	Geographic location (country and/or sea, region)	Urglinica
[Ref.: #36432]	Country	Portugal
[Ref.: #36432]	Country ISO 3 Code	PRT
[Ref.: #36432]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67772]	Biosafety level	1
[Ref.: #36432]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Hymenobacter metalli strain A2-91 16S ribosomal RNA gene, partial sequence	HM032898	1492	ENA	1433843 tax ID

Availability in culture collections External links

[Ref.: #36432]

Culture collection no.

CIP 110140, LMG 25700, KACC 17381, UCCCB29

[Ref.: #93852]

SI-ID 369477

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter ginkgonis sp. nov., isolated from bark of Ginkgo biloba.	Cha I, Kang H, Kim H, Bae S, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004343	2020	*
Phylogeny	Hymenobacter setariae sp. nov., isolated from the ubiquitous weedy grass Setaria viridis.	Chhetri G, Kim J, Kim I, Kim H, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004226	2020	*
Phylogeny	Hymenobacter pomorum sp. nov., Isolated from Apple Orchard Soil.	Ten LN, Li W, Lee SY, Kang IK, Cho YJ, Kim MK, Jung HY	Curr Microbiol	10.1007/s00284-018-1595-9	2018	*
Phylogeny	Hymenobacter marinus sp. nov., isolated from coastal seawater.	Kang H, Kim H, Joung Y, Kim KJ, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001011	2016	*
Phylogeny	Hymenobacter perfusus sp. nov., Hymenobacter flocculans sp. nov. and Hymenobacter metalli sp. nov. three new species isolated from an uranium mine waste water treatment system.	Chung AP, Lopes A, Nobre MF, Morais PV	Syst Appl Microbiol	10.1016/j.syapm.2010.09.002	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36432 Collection of Institut Pasteur ; Curators of the CIP; CIP 110140
#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#68382

Automatically annotated from API zym .

#93852

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID369477.1 )

* These data were automatically processed and therefore are not curated

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