Leisingera aquimarina (DSM 24565, CCUG 55860, LMG 24366)

Name: Leisingera aquimarina (DSM 24565, CCUG 55860, LMG 24366)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13670

Type strain

Strain Designation R-26159

Culture col. no. DSM 24565 CCUG 55860 LMG 24366 R-26159

NCBI tax ID(s) 999611 476529

Special Collections DSMZ CCUG Literature strains

History <- CCUG <- LMG <- <- I. Vandecandelaere, Lab. Microbiology, Ghent Univ., Belgium

Links

Leisingera aquimarina R-26159 is an aerobe, Gram-negative, motile bacterium that was isolated from Marine biofilm on stainless steel electrode.

Gram-negative motile ovoid-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 343774

LMG 24366,CCUG 55860,DSM 24565

@ref 20215

Last LPSN update 2026-02-09 11:21:12

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Leisingera

Species Leisingera aquimarina

Full scientific name Leisingera aquimarina Vandecandelaere et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32650	negative	1.4 µm	1 µm	ovoid-shaped
125439	negative				97.3
125438	negative				97.5

Colony morphology

@ref	Incubation period
17697	3-7 days
60764	2-3 days

Pigmentation

32650

Productionyes

Multimedia

@ref:	66793
multimedia content:	EM_DSM_24565_1.jpg
multimedia.multimedia content:	EM_DSM_24565_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17697	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17697	positive	growth	20
32650	positive	growth	04-37
32650	positive	optimum	30
60764	positive	growth	20

Culture pH

@ref	Ability	Type	PH	PH range
32650	positive	optimum	6.5-8
32650	positive	growth	5.5-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32650	aerobe
60764	aerobe
125439	aerobe	94

Spore formation

@ref	Spore formation	Confidence
32650
125439		94.8
125438		90.263

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32650	NaCl	positive	growth	01-07 %
32650	NaCl	positive	optimum	01-07 %

Observation

32650

Observationaggregates in chains

Enzymes

@ref	Value	Activity	Ec
32650	alkaline phosphatase	+	3.1.3.1
17697	catalase	+	1.11.1.6
32650	catalase	+	1.11.1.6
32650	cytochrome oxidase	+	1.9.3.1
17697	cytochrome-c oxidase	+	1.9.3.1
32650	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Engineered product
#Environmental	#Aquatic	#Marine
#Environmental	#Biofilm	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
17697	Marine biofilm on stainless steel electrode		Genoa, harbour	Italy	ITA	Europe
60764	Marine biofilm on stainless steel electrode	2004-10-01	Genoa,the harbour	Italy	ITA	Europe

Taxonmaps

69479

Global distribution of 16S sequence AM900415 (>99% sequence identity) for Leisingera from Microbeatlas

Aquatic Samples	358
Soil Samples	32
Animal Samples	114
Plant Samples	6
Total Samples	510

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17697	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM47316v1 assembly for Leisingera aquimarina DSM 24565	scaffold	GCA_000473165	999611.3	2521172617	999611	76.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17697	Leisingera aquimarina partial 16S rRNA gene, type strain LMG 24366T	AM900415	1396		476529

GC content

17697

GC-content (mol%)61.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Leisingera aquimarina DSM 24565
NCBI: GCA_000473165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.80	no
125439	motility	BacteriaNetⓘ	yes	69.80	no
125439	gram_stain	BacteriaNetⓘ	negative	97.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	94.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Leisingera aquimarina DSM 24565 DSM 24565
NCBI: GCA_000473165.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	yes
125438	anaerobic	anaerobicⓘ	no	95.86	yes
125438	aerobic	aerobicⓘ	yes	83.45	yes
125438	spore-forming	spore-formingⓘ	no	90.26	yes
125438	thermophilic	thermophileⓘ	no	97.85	no
125438	flagellated	motile2+ⓘ	yes	75.34	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Computational host range prediction-The good, the bad, and the ugly.	Howell AA, Versoza CJ, Pfeifer SP.	Virus Evol	10.1093/ve/vead083	2024
	Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens.	Dogs M, Voget S, Teshima H, Petersen J, Davenport K, Dalingault H, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Standfest S, Rohde M, Gronow S, Kyrpides NC, Woyke T, Simon M, Klenk HP, Goker M, Brinkhoff T.	Stand Genomic Sci	10.4056/sigs.4448212	2013
Genetics	Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.	Breider S, Scheuner C, Schumann P, Fiebig A, Petersen J, Pradella S, Klenk HP, Brinkhoff T, Goker M.	Front Microbiol	10.3389/fmicb.2014.00416	2014
Phylogeny	Recovery of Previously Uncultured Bacterial Genera from Three Mediterranean Sponges.	Versluis D, McPherson K, van Passel MWJ, Smidt H, Sipkema D.	Mar Biotechnol (NY)	10.1007/s10126-017-9766-4	2017
Genetics	Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements.	Riedel T, Teshima H, Petersen J, Fiebig A, Davenport K, Daligault H, Erkkila T, Gu W, Munk C, Xu Y, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Rohde M, Gronow S, Kyrpides NC, Woyke T, Goker M, Brinkhoff T, Klenk HP	Stand Genomic Sci	10.4056/sigs.3858183	2013
	Leisingera thetidis sp. nov., isolated from coastal water.	Kim MJ, Guan Y, Choe H, Li Z, Chung N, Kang YH, Lee MK.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005945	2023
	Jindonia aestuariivivens gen. nov., sp. nov., isolated from a tidal flat on the south-western sea in Republic of Korea.	Park S, Yoon SY, Ha MJ, Yoon JH.	J Microbiol	10.1007/s12275-017-6621-2	2017
Phylogeny	Leisingera nanhaiensis sp. nov., isolated from marine sediment.	Sun F, Wang B, Liu X, Lai Q, Du Y, Li G, Luo J, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.010439-0	2009
Phylogeny	Leisingera aquimarina sp. nov., isolated from a marine electroactive biofilm, and emended descriptions of Leisingera methylohalidivorans Schaefer et al. 2002, Phaeobacter daeponensis Yoon et al. 2007 and Phaeobacter inhibens Martens et al. 2006.	Vandecandelaere I, Segaert E, Mollica A, Faimali M, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.65844-0	2008

References

#17697	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24565
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28861	IJSEM 2788 2008 ( DOI 10.1099/ijs.0.65844-0 , PubMed 19060059 )
#32650	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28861
#60764	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55860
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Leisingera aquimarina (DSM 24565, CCUG 55860, LMG 24366)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000473165

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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