Strain identifier

BacDive ID: 13670

Type strain: Yes

Species: Leisingera aquimarina

Strain Designation: R-26159

Culture col. no.: DSM 24565, CCUG 55860, LMG 24366

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General

@ref: 17697

BacDive-ID: 13670

DSM-Number: 24565

keywords: gram-negative, psychrophilic, aerobe, Bacteria, 16S sequence, genome sequence, motile, ovoid-shaped

description: Leisingera aquimarina R-26159 is an aerobe, psychrophilic, gram-negative bacterium that was isolated from Marine biofilm on stainless steel electrode.

strain history: <- CCUG <- LMG <- <- I. Vandecandelaere, Lab. Microbiology, Ghent Univ., Belgium

doi: 10.13145/bacdive13670.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Leisingera
  • species: Leisingera aquimarina
  • full scientific name: Leisingera aquimarina Vandecandelaere et al. 2008

@ref: 17697

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Leisingera

species: Leisingera aquimarina

full scientific name: Leisingera aquimarina Vandecandelaere et al. 2008

strain designation: R-26159

type strain: yes

Morphology

cell morphology

  • @ref: 32650
  • gram stain: negative
  • cell length: 1.4 µm
  • cell width: 1 µm
  • cell shape: ovoid-shaped
  • motility: yes

colony morphology

@refincubation period
176973-7 days
607642-3 days

pigmentation

  • @ref: 32650
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17697
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf

culture temp

@refgrowthtypetemperaturerange
17697positivegrowth20psychrophilic
32650positivegrowth04-37
32650positiveoptimum30mesophilic
60764positivegrowth20psychrophilic

culture pH

@refabilitytypepH
32650positivegrowth5.5-9
32650positiveoptimum6.5-8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32650aerobe
60764aerobe

spore formation

  • @ref: 32650
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32650NaClpositivegrowth01-07 %
32650NaClpositiveoptimum01-07 %

observation

  • @ref: 32650
  • observation: aggregates in chains

enzymes

@refvalueactivityec
17697catalase+1.11.1.6
17697cytochrome-c oxidase+1.9.3.1
32650alkaline phosphatase+3.1.3.1
32650catalase+1.11.1.6
32650gelatinase+
32650cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
17697Marine biofilm on stainless steel electrodeGenoa, harbourItalyITAEurope
60764Marine biofilm on stainless steel electrodeGenoa,the harbourItalyITAEurope2004-10-01

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Engineered product
#Environmental#Aquatic#Marine
#Environmental#Biofilm

Safety information

risk assessment

  • @ref: 17697
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17697
  • description: Leisingera aquimarina partial 16S rRNA gene, type strain LMG 24366T
  • accession: AM900415
  • length: 1396
  • database: ena
  • NCBI tax ID: 476529

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Leisingera aquimarina DSM 24565GCA_000473165scaffoldncbi999611
66792Leisingera aquimarina DSM 24565999611.3wgspatric999611
66792Leisingera aquimarina DSM 245652521172617permanentimg999611

GC content

  • @ref: 17697
  • GC-content: 61.4

External links

@ref: 17697

culture collection no.: DSM 24565, CCUG 55860, LMG 24366

straininfo link

@refpassport
20218http://www.straininfo.net/strains/836260
20218http://www.straininfo.net/strains/802296

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17697Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24565)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24565
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2886110.1099/ijs.0.65844-0
32650Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information28861
60764Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55860)https://www.ccug.se/strain?id=55860
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)