Name: Rhizobium vallis DSM 26437
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13646

Type strain:

Species: Rhizobium vallis

Culture col. no.: DSM 26437, CCBAU 65647, HAMBI 3073, LMG 25295

Strain history: <- LMG <- W. X. Chen, State Key Laboratory for Agrobiotechnol., China Agricultural Univ., Beijing, PR China; CCBAU 65647

NCBI tax ID(s): 634290 (species)

SI-ID 378476

HAMBI 3073, LMG 25295, DSM 26437

Section

Rhizobium vallis DSM 26437 is a mesophilic, motile bacterium that was isolated from root nodules of Phaseolus vulgaris.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium vallis**
	Full Scientific Name (LPSN)	Rhizobium vallis Wang et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.984

[Ref.: #69480]	Motility	yes Confidence in %91.639

[Ref.: #18221]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18221]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #18221]

Culture medium growth

[Ref.: #18221]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18221]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18221]			growth	30 °C

[Ref.: #18221]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #18221]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #18221]	23941	-	-	-	-	+	+	-	+	-	+/-	-	-	+/-	+/-	+/-	-	-	-	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18221]	Sample type/isolated from	root nodules of Phaseolus vulgaris
[Ref.: #18221]	Host species	Phaseolus vulgaris
[Ref.: #18221]	Geographic location (country and/or sea, region)	Yunnan Province, valley of Red River
[Ref.: #18221]	Country	China
[Ref.: #18221]	Country ISO 3 Code	CHN
[Ref.: #18221]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18221]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18221]	Rhizobium vallis strain CCBAU 65647 16S ribosomal RNA gene, partial sequence	FJ839677	1382	ENA	634290 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium vallis CCBAU 65647	GCA_003985155	scaffold	GenBank	634290 tax ID	*
[Ref.: #66792]	Rhizobium vallis strain CCBAU 65647	634290.7	wgs	PATRIC	634290 tax ID	*
[Ref.: #66792]	Rhizobium vallis LMG 25295	2739367694	draft	JGI IMG/M	634290 tax ID	*

[Ref.: #18221]

GC-content

60.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhizobium vallis CCBAU 65647 NCBI: GCA_003985155.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhizobium vallis CCBAU 65647 NCBI: GCA_003985155.1
[Ref.: #69480]	motile	yes	87.827	no
[Ref.: #69480]	flagellated	no	82.885	no
[Ref.: #69480]	gram-positive	no	97.747	no
[Ref.: #69480]	anaerobic	no	98.786	no
[Ref.: #69480]	aerobic	yes	92.981	no
[Ref.: #69480]	halophile	no	93.861	no
[Ref.: #69480]	spore-forming	no	92.486	no
[Ref.: #69480]	thermophile	no	99.127	no
[Ref.: #69480]	glucose-util	yes	83.414	yes
[Ref.: #69480]	glucose-ferment	no	89.559	yes

Availability in culture collections External links

[Ref.: #18221]

Culture collection no.

DSM 26437, CCBAU 65647, HAMBI 3073, LMG 25295

[Ref.: #82829]

SI-ID 378476

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizobium vallis sp. nov., isolated from nodules of three leguminous species.	Wang F, Wang ET, Wu LJ, Sui XH, Li Y, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.026484-0	2010	*

References

#18221

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26437

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82829

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID378476.1 )

* These data were automatically processed and therefore are not curated

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Rhizobium vallis CCBAU 65647

Rhizobium vallis CCBAU 65647

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