Name: Agrobacterium pusense NRCPB10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13645

Type strain:

Species: Agrobacterium pusense

Strain Designation: NRCPB10

Culture col. no.: DSM 22668, JCM 16209, LMG 25623, NCIMB 14639

Strain history: S. K. Das NRCPB10.

NCBI tax ID(s): 648995 (species)

Section

Agrobacterium pusense NRCPB10 is a mesophilic bacterium that was isolated from rhizosphere soil of chickpea .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Agrobacterium*
	Species	**Agrobacterium pusense**
	Full Scientific Name (PNU)	Agrobacterium pusense (Panday et al. 2011) Mousavi et al. 2016

Synonym

Rhizobium pusense

Information on morphological and physiological properties Morphology

[Ref.: #16456]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16456]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #16456]

Culture medium growth

[Ref.: #16456]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #16456]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16456]			growth	28 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #16456]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16456]	Sample type/isolated from	rhizosphere soil of chickpea (Cicer arietinum L.)
[Ref.: #16456]	Host species	Cicer arietinum
[Ref.: #16456]	Geographic location (country and/or sea, region)	New Delhi, Pusa
[Ref.: #16456]	Country	India
[Ref.: #16456]	Country ISO 3 Code	IND
[Ref.: #16456]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of chickpea (Cicer arietinum L.) in Pusa
[Ref.: #67770]	Host species	Cicer arietinum L.
[Ref.: #67770]	Geographic location (country and/or sea, region)	New Delhi
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ969841 (>99% sequence identity) for Rhizobiaceae from Microbeatlas

Aquatic Samples	386
Soil Samples	235
Animal Samples	2243
Plant Samples	147
Total Samples	3011

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16456]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16456]	Rhizobium pusense strain NRCPB10 16S ribosomal RNA gene, partial sequence	FJ969841	1379	ENA	648995 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium pusense LMG 25623	GCA_900102105	scaffold	GenBank	648995 tax ID	*
[Ref.: #66792]	Rhizobium pusense strain LMG 25623	648995.10	wgs	PATRIC	648995 tax ID	*
[Ref.: #66792]	Rhizobium pusense LMG 25623	2671180227	draft	JGI IMG/M	648995 tax ID	*
[Ref.: #66792]	Rhizobium pusense DSM 22668	2738541310	draft	JGI IMG/M	648995 tax ID	*

[Ref.: #16456]	GC-content	59.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	59 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #16456]

Culture collection no.

DSM 22668, JCM 16209, LMG 25623, NCIMB 14639

[Ref.: #20218]

Associated Passport(s) in StrainInfo

867716, 853311, 867717

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation, Identification and Characterization of Endophytic Bacterium Rhizobium oryzihabitans sp. nov., from Rice Root with Biotechnological Potential in Agriculture.	Zhao J, Zhao X, Wang J, Gong Q, Zhang X, Zhang G	Microorganisms	10.3390/microorganisms8040608	2020	*
Phylogeny	Agrobacterium salinitolerans sp. nov., a saline-alkaline-tolerant bacterium isolated from root nodule of Sesbania cannabina.	Yan J, Li Y, Yan H, Chen WF, Zhang X, Wang ET, Han XZ, Xie ZH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001885	2017	*
Genetics	Draft Genome Sequence of Rhizobiumpusense Strain NRCPB10(T) (LMG 25623(T)) Isolated from Rhizosphere Soil of Chickpeas (Cicer arietinum L.) Grown in India.	Badhai J, Whitman WB, Das SK	Genome Announc	10.1128/genomeA.00282-17	2017	*
Phylogeny	Rhizobium subbaraonis sp. nov., an endolithic bacterium isolated from beach sand.	Ramana CV, Parag B, Girija KR, Ram BR, Ramana VV, Sasikala C	Int J Syst Evol Microbiol	10.1099/ijs.0.041442-0	2012	*
Phylogeny	Rhizobium pusense sp. nov., isolated from the rhizosphere of chickpea (Cicer arietinum L.).	Panday D, Schumann P, Das SK	Int J Syst Evol Microbiol	10.1099/ijs.0.028407-0	2010	*
Biotechnology	Characterization of regioselective glycosyltransferase of Rhizobium pusense JCM 16209(T) useful for resveratrol 4'-O-alpha-d-glucoside production.	Kimoto S, Takeuchi M, Kishino S, Itagaki Y, Hara R, Kitamura N, Okada N, Park SB, Ando A, Ueda M, Ogawa J	J Biosci Bioeng	10.1016/j.jbiosc.2022.06.011	2022	*

References

#16456

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22668

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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