Name: Nocardia violaceofusca 78-N26
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 136347

Type strain:

Species: Nocardia violaceofusca

Strain Designation: 78-N26

Culture col. no.: CIP 104780, IFO 14427, JCM 3343, NRRL B-16250, BCRC 13736, IFM 0857, IMSNU 21206, NBRC 14427

Strain history: CIP <- 1996, IFO <- 1985, J. Ruan: strain 78-N26

NCBI tax ID(s): 1223550 (strain), 941182 (species)

Section

Nocardia violaceofusca 78-N26 is a mesophilic prokaryote of the family Not assigned to family.

mesophilic
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

[Ref.: #35732]	Phylum	Not assigned to order
[Ref.: #35732]	Class	Not assigned to order
[Ref.: #35732]	Order	Not assigned to order
[Ref.: #35732]	Family	Not assigned to family
[Ref.: #35732]	Genus	Nocardia
[Ref.: #35732]	Species	Nocardia violaceofusca
[Ref.: #35732]	Strain Designation	78-N26

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.21

Information on culture and growth conditions Culture and growth conditions

[Ref.: #35732]

Culture medium

MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum

[Ref.: #35732]

Culture medium growth

[Ref.: #35732]

Culture medium composition

expand / minimize

[Ref.: #35732]

Culture medium

CIP Medium 194

[Ref.: #35732]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #35732]

Culture medium

CIP Medium 116

[Ref.: #35732]

Culture medium growth

[Ref.: #35732]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #35732]			growth	30 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #35732]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %98.805

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #35732]	Sample type/isolated from	Environment, Soil
[Ref.: #35732]	Country	China
[Ref.: #35732]	Country ISO 3 Code	CHN
[Ref.: #35732]	Continent	Asia

[Ref.: #35732]	Country	China
[Ref.: #35732]	Country ISO 3 Code	CHN
[Ref.: #35732]	Continent	Asia
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #35732]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardia violaceofusca NBRC 14427	GCA_001613525	contig	GenBank	1223550 tax ID
[Ref.: #66792]	Nocardia violaceofusca NBRC 14427	1223550.4	wgs	PATRIC	1223550 tax ID	*
[Ref.: #66792]	Nocardia violaceofusca NBRC 14427	2731957758	draft	JGI IMG/M	1223550 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nocardia violaceofusca NBRC 14427 PATRIC: 1223550.4
[Ref.: #69481]	spore-forming	yes	70	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardia violaceofusca NBRC 14427 PATRIC: 1223550.4
[Ref.: #69480]	motile	no	94.598	no
[Ref.: #69480]	gram-positive	yes	85.25	no
[Ref.: #69480]	anaerobic	no	99.132	no
[Ref.: #69480]	aerobic	yes	91.928	no
[Ref.: #69480]	halophile	no	93.199	no
[Ref.: #69480]	spore-forming	yes	80.545	no
[Ref.: #69480]	glucose-util	yes	87.201	no
[Ref.: #69480]	flagellated	no	98.794	no
[Ref.: #69480]	thermophile	no	98.718	yes
[Ref.: #69480]	glucose-ferment	no	92.682	no

Availability in culture collections External links

[Ref.: #35732]

Culture collection no.

CIP 104780, IFO 14427, JCM 3343, NRRL B-16250, BCRC 13736, IFM 0857, IMSNU 21206, NBRC 14427

References
#35732 Collection of Institut Pasteur ; Curators of the CIP; CIP 104780

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Nocardia violaceofusca NBRC 14427

Nocardia violaceofusca NBRC 14427

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