Strain identifier
BacDive ID: 136347
Type strain: 
Species: Nocardia violaceofusca
Strain Designation: 78-N26
Strain history: CIP <- 1996, IFO <- 1985, J. Ruan: strain 78-N26
NCBI tax ID(s): 1223550 (strain), 941182 (species)
version 9.3 (current version)
General
@ref: 35732
BacDive-ID: 136347
keywords: genome sequence, mesophilic, Gram-positive
description: Nocardia violaceofusca 78-N26 is a mesophilic, Gram-positive prokaryote of the family Not assigned to family.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1223550 | strain |
| 941182 | species |
strain history
| @ref | history |
|---|---|
| 67770 | J. Ruan 78-N26. |
| 35732 | CIP <- 1996, IFO <- 1985, J. Ruan: strain 78-N26 |
doi: 10.13145/bacdive136347.20250331.9.3
Name and taxonomic classification
@ref: 35732
phylum: Not assigned to order
class: Not assigned to order
order: Not assigned to order
family: Not assigned to family
genus: Nocardia
species: Nocardia violaceofusca
strain designation: 78-N26
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | positive | 91.673 |
| 125439 | positive | 94.5 |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 35732 | MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum | yes | Distilled water make up to (1000.000 ml);Agar (20.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g) | |
| 35732 | CIP Medium 194 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=194 | |
| 35732 | CIP Medium 116 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=116 |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 35732 | positive | growth | 30 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 99.1
Isolation, sampling and environmental information
isolation
| @ref | country | origin.country | continent | sample type |
|---|---|---|---|---|
| 35732 | China | CHN | Asia | |
| 67770 | China | CHN | Asia | Soil |
| 35732 | China | CHN | Asia | Environment, Soil |
Safety information
risk assessment
- @ref: 35732
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nocardia violaceofusca NBRC 14427 | 1223550.4 | wgs | patric | 1223550 |
| 66792 | Nocardia violaceofusca NBRC 14427 | 2731957758 | draft | img | 1223550 |
| 67770 | Nocardia violaceofusca NBRC 14427 | GCA_001613525 | contig | ncbi | 1223550 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 94.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 75.2 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 61.7 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.673 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.14 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 65.974 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 88.883 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.9 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 89.5 | no |
External links
@ref: 35732
culture collection no.: CIP 104780, IFO 14427, JCM 3343, NRRL B-16250, BCRC 13736, IFM 0857, IMSNU 21206, NBRC 14427
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 35732 | Curators of the CIP | Collection of Institut Pasteur (CIP 104780) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104780 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |