Rhizobium rhizogenes (DSM 30148, ATCC 11325, IFO 13257)

Name: Rhizobium rhizogenes (DSM 30148, ATCC 11325, IFO 13257)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13571

Type strain

Culture col. no. DSM 30148 ATCC 11325 IFO 13257 NBRC 13257 NCPPB 2991 11 more

NCBI tax ID(s) 1220581 359

Special Collections DSMZ CCUG JCM KCTC CIP JMRC

History DSMZ <- ATCC <- A.J. Riker JCM <-- IAM 13570 <-- ATCC 11325 <-- A. J. Riker. CIP <- 1995, ATCC <- A.J. Riker

Links

Rhizobium rhizogenes DSM 30148 is a Gram-negative, rod-shaped plant pathogen that was isolated from Apple.

Gram-negative rod-shaped plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 443

LMG 150,ATCC 11325,ICMP 5794,IFO 13257,IMET 11180,NCPPB 2991,PDDCC 5794,CIP 104328,IAM 13570,CECT 4117,CCRC 12819,CCRC 13207,CFBP 2408,CCT 4832,NBRC 13257,CFBP 5520,HAMBI 1816,KCTC 12403,BCRC 12819,KACC 10734,JCM 20919,CGMCC 1.2556,DSM 30148,CCUG 12534 C

@ref 20215

Last LPSN update 2026-05-29 08:28:04

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Rhizobium

Species Rhizobium rhizogenes

Full scientific name Rhizobium rhizogenes (Riker et al. 1930) Young et al. 2001

Synonyms (3)

"Phytomonas rhizogenes"
Martinezella rhizogenes
Agrobacterium rhizogenes

BacDive ID	Other strains from **Rhizobium rhizogenes** (7)	Type strain
13535	R. rhizogenes TR 102, C0, DSM 13875, ATCC 13332, NCPPB ...
13572	R. rhizogenes 38, DSM 30200, DSM 60572, JCM 20921, IAM ...
136344	R. rhizogenes CIP 104786, ATCC 15834, JCM 20920, BCRC 15010, ...
139239	R. rhizogenes TR 104, 5, CIP 104330, ATCC 13333, JCM 20990, ...
157290	R. rhizogenes IMI 350518
163011	R. rhizogenes JCM 20923, IAM 13574, ICMP 3379, LMG 138, ...
163078	R. rhizogenes JCM 21076, IAM 14218, ICPB TT133, LMG 341, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438	negative		98
125439	negative		97.76
122199	negative	rod-shaped

Colony morphology

9168

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
41763	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
9168	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
122199	CIP Medium 72	Medium recipe at CIP
122199	CIP Medium 3	Medium recipe at CIP
68368	MacConkey medium			from API 20E

Culture temp

@ref	Growth	Type	Temperature (°C)
9168	positive	growth	26
41763	positive	growth	25
67770	positive	growth	25
122199	positive	growth	25-30
122199	negative	growth	5
122199	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.351

Spore formation

@ref	Spore formation	Confidence
125439		99.373
125438		90.914

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
122199	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
122199	17234 ChEBI	glucose	-	degradation
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
122199	17632 ChEBI	nitrate	-	reduction
68368	17632 ChEBI	nitrate	-	reduction	from API 20E
122199	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
122199	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
122199	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68369	35581 ChEBI	indole		-	from API 20NE
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122199	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122199	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
122199	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122199	caseinase	-	3.4.21.50
9168	catalase	+	1.11.1.6
122199	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
9168	cytochrome-c oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122199	gelatinase	-
68369	gelatinase	-		from API 20NE
68368	gelatinase	-		from API 20E
122199	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122199	lipase	-
68382	lipase (C 14)	-		from API zym
122199	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
122199	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
122199	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
122199	tween esterase	-
122199	urease	+	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
9168	-	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	+	-	-	-	-	-	not determinedn.d.	not determinedn.d.	-	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122199	-	+	+	+	-	+	-	-	-	-	+	-	+	+	-	+	+	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
9168	-	-	-	-	+	+	-	+	+	+	+	+	-	+	-	-	-	+	-	-	+
9168	+	-	+	-	-	+	-	+	+	+	+	+	+	-	+	-	-	+	+	-	not determinedn.d.
9168	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	+	-	+
9168	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	+	+	-	-	not determinedn.d.
9168	-	-	-	-	+/-	+	-	+	-	-	+/-	-	-	+/-	-	-	-	+/-	-	-	+
9168	-	-	-	-	+	+	-	+	-	+	+	+	-	+	-	-	-	+	-	-	-
45734	not determinedn.d.	not determinedn.d.	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122199	not determinedn.d.	+	+	+	+	+	-	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	-	+	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	-	+	-	-	-	-	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type
67770	Apple
122199	Food, Apple

Taxonmaps

69479

Global distribution of 16S sequence AB680381 (>99% sequence identity) for Rhizobiaceae from Microbeatlas

Aquatic Samples	403
Soil Samples	3171
Animal Samples	1252
Plant Samples	1013
Total Samples	5839

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
9168		1	Risk group (German classification) According to TRBA 466
122199		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM69609v1 assembly for Rhizobium rhizogenes NBRC 13257	contig	GCA_000696095	1220581.4	2588253840	1220581	68.39
67770	ASM700298v1 assembly for Rhizobium rhizogenes LMG150	contig	GCA_007002985	359.176	8110243830	359	64.43

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Agrobacterium rhizogenes strain ATCC 11325 16S ribosomal RNA gene, partial sequence	AY945955	1473	359
20218	Agrobacterium rhizogenes strain CCT 4832T 16S-23S ribosomal DNA intergenic spacer region, 3' end	AF091794	741	359
20218	Agrobacterium rhizogenes strain CCT 4832T 16S-23S ribosomal DNA intergenic spacer region, 5' end	AF091795	716	359
20218	Rhizobium rhizogenes strain DSM 30148 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence	AF345275	1281	359
20218	Agrobacterium rhizogenes gene for 16S rRNA, strain: IAM 13570	D12788	1434	359
20218	Agrobacterium rhizogenes gene for 16S ribosomal RNA, complete sequence	D14501	1468	359
20218	Agrobacterium rhizogenes genes for 16S rRNA, tRNA-Ile, tRNA-Ala, 23S rRNA 150-b fragment, IVS, 23S rRNA 1.3-kb fragment A, partial and complete sequence, strain: NBRC 13257	AB247604	3027	359
20218	Agrobacterium rhizogenes gene for 16S rRNA, partial sequence, strain: NBRC 13257	AB680381	1406	359

GC content

@ref	GC-content (mol%)	Method
67770	61.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM69609v1 assembly for Rhizobium rhizogenes NBRC 13257
BV-BRC: 1220581.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.35	no
125439	motility	BacteriaNetⓘ	yes	55.75	no
125439	gram_stain	BacteriaNetⓘ	negative	97.76	no
125439	spore_formation	BacteriaNetⓘ	no	99.37	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhizobium rhizogenes NBRC 13257
PATRIC: 1220581.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	95.83	no
125438	spore-forming	spore-formingⓘ	no	90.91	no
125438	aerobic	aerobicⓘ	yes	86.30	no
125438	thermophilic	thermophileⓘ	no	98.75	yes
125438	flagellated	motile2+ⓘ	yes	75.64	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Hairy Roots as Producers of Coumarins, Lignans, and Xanthones.	Malarz J, Ryngwelska I, Stojakowska A.	Molecules	10.3390/molecules30173596	2025
	Development of PCR and TaqMan PCR Assays to Detect Pseudomonas coronafaciens, a Causal Agent of Halo Blight of Oats.	An JH, Noh YH, Kim YE, Lee HI, Cha JS.	Plant Pathol J	10.5423/ppj.oa.09.2014.0096	2015
Transcriptome	Insight in the transcriptome data of hairy root disease-causing bacterium-Agrobacterium rhizogenes.	Yadav A, Verma H, Ansari WA, Singh AL, Singh M.	Data Brief	10.1016/j.dib.2020.105910	2020
Genetics	The genome sequence of hairy root Rhizobium rhizogenes strain LBA9402: Bioinformatics analysis suggests the presence of a new opine system in the agropine Ri plasmid.	Hooykaas MJG, Hooykaas PJJ.	Microbiologyopen	10.1002/mbo3.1180	2021
	Back to the Roots: Agrobacterium-Specific Phages Show Potential to Disinfect Nutrient Solution from Hydroponic Greenhouses.	Fortuna KJ, Holtappels D, Venneman J, Baeyen S, Vallino M, Verwilt P, Rediers H, De Coninck B, Maes M, Van Vaerenbergh J, Lavigne R, Wagemans J.	Appl Environ Microbiol	10.1128/aem.00215-23	2023
	Draft Genome Sequence of Streptomyces olivochromogenes NBRC 3561, a Bioactive Peptide-Producing Actinobacterium.	Dohra H, Miyake Y, Kodani S.	Genome Announc	10.1128/genomea.01048-17	2017
	Structural Diversity and Biological Activity of Cyanopeptolins Produced by Nostoc edaphicum CCNP1411.	Konkel R, Ceglowska M, Szubert K, Wieczerzak E, Iliakopoulou S, Kaloudis T, Mazur-Marzec H.	Mar Drugs	10.3390/md21100508	2023
	Streptopeptolin, a Cyanopeptolin-Type Peptide from Streptomyces olivochromogenes.	Kodani S, Komaki H, Hemmi H, Miyake Y, Kaweewan I, Dohra H.	ACS Omega	10.1021/acsomega.8b01042	2018
	Identification of the peptide epimerase MslH responsible for d-amino acid introduction at the C-terminus of ribosomal peptides.	Feng Z, Ogasawara Y, Dairi T.	Chem Sci	10.1039/d0sc06308h	2020
	Development of a New Recombineering System for Agrobacterium Species.	Bian Z, Li S, Yang R, Yin J, Zhang Y, Tu Q, Fu J, Li R	Appl Environ Microbiol	10.1128/aem.02499-21	2022
Metabolism	[Increasing the content of active constituents in Polygonum cuspidatum hairy root by gene transformation technology].	Miao XY, Yu SH, Shen YZ, Huang ZJ	Yao Xue Xue Bao		2007
Metabolism	Genetic transformation of Gentiana macrophylla with Agrobacterium rhizogenes: growth and production of secoiridoid glucoside gentiopicroside in transformed hairy root cultures.	Tiwari RK, Trivedi M, Guang ZC, Guo GQ, Zheng GC	Plant Cell Rep	10.1007/s00299-006-0236-0	2006
Phylogeny	The coexistence of symbiosis and pathogenicity-determining genes in Rhizobium rhizogenes strains enables them to induce nodules and tumors or hairy roots in plants.	Velazquez E, Peix A, Zurdo-Pineiro JL, Palomo JL, Mateos PF, Rivas R, Munoz-Adelantado E, Toro N, Garcia-Benavides P, Martinez-Molina E	Mol Plant Microbe Interact	10.1094/MPMI-18-1325	2005
	Agrobacterium rhizogenes-mediated transformation of Echinacea purpurea.	Trypsteen M, Van Lijsebettens M, Van Severen R, Van Montagu M	Plant Cell Rep	10.1007/BF00236463	1991
	Characterization and Genomic Analysis of Fererhizobium litorale gen. nov., sp. nov., Isolated from the Sandy Sediments of the Sea of Japan Seashore.	Romanenko L, Otstavnykh N, Tanaka N, Kurilenko V, Svetashev V, Tekutyeva L, Mikhailov V, Isaeva M.	Microorganisms	10.3390/microorganisms11102385	2023
Phylogeny	Rhizobium capsici sp. nov., isolated from root tumor of a green bell pepper (Capsicum annuum var. grossum) plant.	Lin SY, Hung MH, Hameed A, Liu YC, Hsu YH, Wen CZ, Arun AB, Busse HJ, Glaeser SP, Kampfer P, Young CC.	Antonie Van Leeuwenhoek	10.1007/s10482-014-0371-5	2015
Metabolism	The growth of Steroidobacter agariperforans sp. nov., a novel agar-degrading bacterium isolated from soil, is enhanced by the diffusible metabolites produced by bacteria belonging to Rhizobiales.	Sakai M, Hosoda A, Ogura K, Ikenaga M.	Microbes Environ	10.1264/jsme2.me13169	2014
Phylogeny	Rhizobium vallis sp. nov., isolated from nodules of three leguminous species.	Wang F, Wang ET, Wu LJ, Sui XH, Li Y, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.026484-0	2010
Phylogeny	Rhizobium multihospitium sp. nov., isolated from multiple legume species native of Xinjiang, China.	Han TX, Wang ET, Wu LJ, Chen WF, Gu JG, Gu CT, Tian CF, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.65568-0	2008
Phylogeny	Rhizobium lusitanum sp. nov. a bacterium that nodulates Phaseolus vulgaris.	Valverde A, Igual JM, Peix A, Cervantes E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.64402-0	2006

References

#9168	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30148
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41763	; Curators of the CIP;
#45734	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12534 C
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122199	Collection of Institut Pasteur ; Curators of the CIP; CIP 104328
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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About us

Rhizobium rhizogenes (DSM 30148, ATCC 11325, IFO 13257)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000696095

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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