Name: Rhizobium rhizogenes CIP 104786
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 136344

Type strain:

Species: Rhizobium rhizogenes

Culture col. no.: CIP 104786, ATCC 15834, JCM 20920, BCRC 15010, BCRC 15762, CCM 4999, CECT 477, IAM 13571, ICMP 8640, LMG 152, NCAIM B.01337, NCPPB 2629

Strain history: CIP <- 1996, ATCC <- R.D. Ulurbin <- P.A. Ark

NCBI tax ID(s): 359 (species)

SI-ID 444

JCM 20920, NCIM 5140, KACC 11191, ICMP 8640, IAM 13571, CCRC 15762, BCRC 15762, CCRC 15010, BCRC 15010, NCCB 2716, CCM 4999, KCTC 2703, NCAIM B.01337, CIP 104786, NCPPB 2629, CECT 477, ATCC 15834, LMG 152

Other strains from Rhizobium rhizogenes

R. rhizogenes DSM 30148, ATCC 11325, IFO 13257, ... (type strain)
R. rhizogenes TR 102, C0, DSM 13875, ATCC 13332, ...
R. rhizogenes 38, DSM 30200, DSM 60572, JCM 20921, ...
R. rhizogenes TR 104, 5, CIP 104330, ATCC 13333, ...
R. rhizogenes IMI 350518
R. rhizogenes JCM 20923, IAM 13574, ICMP 3379, ...
R. rhizogenes JCM 21076, IAM 14218, ICPB TT133, ...

Section

Rhizobium rhizogenes CIP 104786 is an obligate aerobe, psychrophilic, motile bacterium of the family Rhizobiaceae.

motile
obligate aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium rhizogenes**
	Full Scientific Name (LPSN)	Rhizobium rhizogenes (Riker et al. 1930) Young et al. 2001

	Synonym	"Phytomonas* rhizogenes"*
	Synonym	Agrobacterium rhizogenes

Information on morphological and physiological properties Morphology

[Ref.: #35729]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #35729]	Cell shape	rod-shaped

[Ref.: #35729]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %91.334

Information on culture and growth conditions Culture and growth conditions

[Ref.: #35729]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35729]

Culture medium growth

[Ref.: #35729]

Culture medium composition

expand / minimize

[Ref.: #35729]

Culture medium

CIP Medium 3

[Ref.: #35729]

Culture medium growth

[Ref.: #35729]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #35729]		growth	22 °C
[Ref.: #35729]		growth	22-30 °C
[Ref.: #35729]	no	growth	5 °C
[Ref.: #35729]	no	growth	10 °C
[Ref.: #35729]	no	growth	41 °C
[Ref.: #67770]		growth	25 °C

[Ref.: #35729]	Temperature range	psychrophilic
[Ref.: #35729]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #35729]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #35729]	esculin ChEBI	+	hydrolysis
[Ref.: #35729]	glucose ChEBI	+/-	degradation
[Ref.: #35729]	nitrate ChEBI	-	reduction
[Ref.: #35729]	nitrate ChEBI	-	respiration
[Ref.: #35729]	nitrite ChEBI	-	reduction
[Ref.: #35729]	sodium thiosulfate ChEBI	-	builds gas from

	Metabolite production	Metabolite	Production
[Ref.: #35729]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #35729]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #35729]	amylase	-
[Ref.: #35729]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #35729]	caseinase	-	3.4.21.50
[Ref.: #35729]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #35729]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #35729]	gelatinase	-
[Ref.: #35729]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #35729]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #35729]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #35729]	oxidase	+
[Ref.: #35729]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #35729]	tween esterase	-
[Ref.: #35729]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #35729]	818	not determinedn.d.	+	+	+	+	+	-	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	-	+	+	+	-	-	+	+	+	+	-	+	-	-	+	+	+	+	+	-	+	+	+	-	-	-	-	-	+	+	-	-	-	+	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	-	-	-	+	+	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #35729]	8195	-	-	+	+	-	+	-	+	+	-	+	-	+	+	-	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence HQ735082 (>99% sequence identity) for Rhizobiaceae from Microbeatlas

Aquatic Samples	403
Soil Samples	3171
Animal Samples	1252
Plant Samples	1013
Total Samples	5839

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #35729]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Agrobacterium rhizogenes strain IAM13571 16S ribosomal RNA gene, partial sequence	HQ735082	1455	ENA	359 tax ID
[Ref.: #67770]	Agrobacterium rhizogenes partial 16S rRNA gene, strain LMG 152	X67224	1432	ENA	359 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhizobium rhizogenes LMG152	GCA_007002955	contig	GenBank	359 tax ID
[Ref.: #67770]	Rhizobium rhizogenes ATCC 15834	GCA_006802085	contig	GenBank	359 tax ID
[Ref.: #67770]	Rhizobium rhizogenes ATCC 15834	GCA_013321955	contig	GenBank	359 tax ID
[Ref.: #67770]	Rhizobium rhizogenes ATCC 15834	GCA_000705135	contig	GenBank	359 tax ID
[Ref.: #66792]	Agrobacterium rhizogenes strain ATCC 15834	359.170	wgs	PATRIC	359 tax ID	*
[Ref.: #66792]	Agrobacterium rhizogenes strain LMG152	359.175	wgs	PATRIC	359 tax ID	*

[Ref.: #67770]

GC-content

60.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Agrobacterium rhizogenes strain LMG152 PATRIC: 359.175
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agrobacterium rhizogenes strain ATCC 15834 PATRIC: 359.20
[Ref.: #69480]	gram-positive	no	97.855	no
[Ref.: #69480]	anaerobic	no	98.489	no
[Ref.: #69480]	halophile	no	94.142	no
[Ref.: #69480]	spore-forming	no	92.851	no
[Ref.: #69480]	glucose-util	yes	88.841	no
[Ref.: #69480]	motile	yes	88.358	no
[Ref.: #69480]	flagellated	no	74.948	no
[Ref.: #69480]	aerobic	yes	91.976	no
[Ref.: #69480]	thermophile	no	99.543	yes
[Ref.: #69480]	glucose-ferment	no	86.069	no

Availability in culture collections External links

[Ref.: #35729]

Culture collection no.

CIP 104786, ATCC 15834, JCM 20920, BCRC 15010, BCRC 15762, CCM 4999, CECT 477, IAM 13571, ICMP 8640, LMG 152, NCAIM B.01337, NCPPB 2629

[Ref.: #93515]

SI-ID 444

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Enzymology	Polyscias filicifolia (Araliaceae) Hairy Roots with Antigenotoxic and Anti-Photogenotoxic Activity.	Sliwinska A, Figat R, Zgadzaj A, Wilenska B, Misicka A, Nalecz-Jawecki G, Pietrosiuk A, Syklowska-Baranek K	Molecules	10.3390/molecules27010186	2021	*
Genetics	Abietane Diterpenoids from the Hairy Roots of Salvia corrugata.	Kentsop RAD, Iobbi V, Donadio G, Ruffoni B, De Tommasi N, Bisio A	Molecules	10.3390/molecules26175144	2021	*
Biotechnology	Enhanced inulin production by hairy root cultures of Cichorium intybus in response to Pi and Fe starvation.	Tabatabaee S, Sanjarian F, Lohrasebi T, Karimi M	Mol Biol Res Commun	10.22099/mbrc.2021.38031.1527	2021	*
Pathogenicity	Compact shoot architecture of Osteospermum fruticosum transformed with Rhizobium rhizogenes.	Desmet S, Dhooghe E, De Keyser E, Van Huylenbroeck J, Geelen D	Plant Cell Rep	10.1007/s00299-021-02719-z	2021	*
Biotechnology	Methyl jasmonate enhances ursolic, oleanolic and rosmarinic acid production and sucrose induced biomass accumulation, in hairy roots of Lepechinia caulescens.	Vergara-Martinez VM, Estrada-Soto SE, Valencia-Diaz S, Garcia-Sosa K, Pena-Rodriguez LM, Arellano-Garcia JJ, Perea-Arango I	PeerJ	10.7717/peerj.11279	2021	*
Biotechnology	Successful use of Nicotiana tabacum hairy roots for the recombinant production of Cecropin A peptide.	Hashemi S, Niazi A, Baghizadeh A, Taghizadeh MS	Biotechnol Appl Biochem	10.1002/bab.2158	2021	*
Pathogenicity	Transformed tissue of Dionaea muscipula J. Ellis as a source of biologically active phenolic compounds with bactericidal properties.	Makowski W, Krolicka A, Nowicka A, Zwyrtkova J, Tokarz B, Pecinka A, Banasiuk R, Tokarz KM	Appl Microbiol Biotechnol	10.1007/s00253-021-11101-8	2021	*
Biotechnology	Establishment of the hairy root culture of Echium plantagineum L. and its shikonin production.	Fu JY, Zhao H, Bao JX, Wen ZL, Fang RJ, Fazal A, Yang MK, Liu B, Yin TM, Pang YJ, Lu GH, Qi JL, Yang YH	3 Biotech	10.1007/s13205-020-02419-7	2020	*
Biotechnology	Production of phenolic acids in hairy root cultures of medicinal plant Mentha spicata L. in response to elicitors.	Yousefian S, Lohrasebi T, Farhadpour M, Haghbeen K	Mol Biol Res Commun	10.22099/mbrc.2020.36031.1475	2020	*
Metabolism	Novel method for improving ardicrenin content in hairy roots of Ardisia crenata Sims plants.	Hu J, Liu S, Cheng Q, Pu S, Mao M, Mu Y, Dan F, Yang J, Ma M	J Biotechnol	10.1016/j.jbiotec.2020.02.009	2020	*
Biotechnology	Enhanced flavonoid production in hairy root cultures of Scutellaria bornmuelleri by elicitor induced over-expression of MYB7 and FNScapital PE, Cyrillic2 genes.	Gharari Z, Bagheri K, Danafar H, Sharafi A	Plant Physiol Biochem	10.1016/j.plaphy.2020.01.002	2020	*
Metabolism	Establishment of hairy root cultures by Agrobacterium rhizogenes mediated transformation of Trachyspermum ammi L. for the efficient production of thymol.	Vamenani R, Pakdin-Parizi A, Mortazavi M, Gholami Z	Biotechnol Appl Biochem	10.1002/bab.1880	2020	*
Biotechnology	Hairy root induction and Farnesiferol B production of endemic medicinal plant Ferula pseudalliacea.	Khazaei A, Bahramnejad B, Mozafari AA, Dastan D, Mohammadi S	3 Biotech	10.1007/s13205-019-1935-x	2019	*
Metabolism	Potential of the genetically transformed root cultures of Plumbago europaea for biomass and plumbagin production.	Beigmohamadi M, Movafeghi A, Jafari S, Sharafi A	Biotechnol Prog	10.1002/btpr.2905	2019	*
Metabolism	Improving the production of podophyllotoxin in hairy roots of Hyptis suaveolens induced from regenerated plantlets.	Bazaldua C, Cardoso-Taketa A, Trejo-Tapia G, Camacho-Diaz B, Arellano J, Ventura-Zapata E, Villarreal ML	PLoS One	10.1371/journal.pone.0222464	2019	*
Pathogenicity	Iron oxide nanoparticles: a novel elicitor to enhance anticancer flavonoid production and gene expression in Dracocephalum kotschyi hairy-root cultures.	Nourozi E, Hosseini B, Maleki R, Abdollahi Mandoulakani B	J Sci Food Agric	10.1002/jsfa.9921	2019	*
Metabolism	Metabolic Engineering of Glycyrrhizin Pathway by Over-Expression of Beta-amyrin 11-Oxidase in Transgenic Roots of Glycyrrhiza glabra.	Shirazi Z, Aalami A, Tohidfar M, Sohani MM	Mol Biotechnol	10.1007/s12033-018-0082-7	2018	*
Metabolism	Investigation of Linum flavum (L.) Hairy Root Cultures for the Production of Anticancer Aryltetralin Lignans.	Renouard S, Corbin C, Drouet S, Medvedec B, Doussot J, Colas C, Maunit B, Bhambra AS, Gontier E, Jullian N, Mesnard F, Boitel M, Abbasi BH, Arroo RRJ, Laine E, Hano C	Int J Mol Sci	10.3390/ijms19040990	2018	*
Cultivation	[Factors influencing induction and in vitro culture of hairy roots in Phytolacca americana L.]	Shi H, Zhu Y, Tsang PKE, Chow CFS, Yu Z, Huang S	Sheng Wu Gong Cheng Xue Bao	10.13345/j.cjb.160341	2017	*
Pathogenicity	A Cytotoxic and Anti-inflammatory Campesterol Derivative from Genetically Transformed Hairy Roots of Lopezia racemosa Cav. (Onagraceae).	Moreno-Anzurez NE, Marquina S, Alvarez L, Zamilpa A, Castillo-Espana P, Perea-Arango I, Torres PN, Herrera-Ruiz M, Diaz Garcia ER, Garcia JT, Arellano-Garcia J	Molecules	10.3390/molecules22010118	2017	*
Pathogenicity	Effect of Medium Supplements on Agrobacterium rhizogenes Mediated Hairy Root Induction from the Callus Tissues of Camellia sinensis var. sinensis.	Rana MM, Han ZX, Song DP, Liu GF, Li DX, Wan XC, Karthikeyan A, Wei S	Int J Mol Sci	10.3390/ijms17071132	2016	*
Pathogenicity	Advances in Boerhaavia diffusa hairy root technology: a valuable pursuit for identifying strain sensitivity and up-scaling factors to refine metabolite yield and bioactivity potentials.	Gupta R, Pandey P, Singh S, Singh DK, Saxena A, Luqman S, Bawankule DU, Banerjee S	Protoplasma	10.1007/s00709-015-0875-5	2015	*
Cultivation	[Induction and in vitro culture of hairy roots of Dianthus caryophyllus and its plant regeneration].	Shi H, Zhu Y, Wang B, Sun J, Huang S	Sheng Wu Gong Cheng Xue Bao		2014	*
Metabolism	Establishment of hairy root cultures of Rhaponticum carthamoides (Willd.) Iljin for the production of biomass and caffeic acid derivatives.	Skala E, Kicel A, Olszewska MA, Kiss AK, Wysokinska H	Biomed Res Int	10.1155/2015/181098	2015	*
Pathogenicity	Establishment of Salvia castanea Diels f. tomentosa Stib. hairy root cultures and the promotion of tanshinone accumulation and gene expression with Ag(+), methyl jasmonate, and yeast extract elicitation.	Li B, Wang B, Li H, Peng L, Ru M, Liang Z, Yan X, Zhu Y	Protoplasma	10.1007/s00709-015-0790-9	2015	*
Genetics	Draft Genome Sequence of Rhizobium rhizogenes Strain ATCC 15834.	Kajala K, Coil DA, Brady SM	Genome Announc	10.1128/genomeA.01108-14	2014	*
Metabolism	Lignan formation in hairy root cultures of Edelweiss (Leontopodium nivale ssp. alpinum (Cass.) Greuter).	Wawrosch C, Schwaiger S, Stuppner H, Kopp B	Fitoterapia	10.1016/j.fitote.2014.06.008	2014	*
Metabolism	Production of oleanolic acid glycosides by hairy root established cultures of Calendula officinalis L.	Dlugosz M, Wiktorowska E, Wisniewska A, Paczkowski C	Acta Biochim Pol	2013_480	2013	*
Metabolism	[Effects of ABA on tanshinones accumulation of Salvia miltiorrhiza hairy root].	Sheng DF, Zhang YL	Zhong Yao Cai		2013	*
Biotechnology	Linum narbonense: A new valuable tool for biotechnological production of a potent anticancer lignan Justicidine B.	Ionkova I, Sasheva P, Ionkov T, Momekov G	Pharmacogn Mag	10.4103/0973-1296.108138	2013	*
Metabolism	Methyl jasmonate elicitation enhances glycyrrhizin production in Glycyrrhiza inflata hairy roots cultures.	Wongwicha W, Tanaka H, Shoyama Y, Putalun W	Z Naturforsch C J Biosci	10.1515/znc-2011-7-815	2011	*
Metabolism	Modulation of plumbagin production in Plumbago zeylanica using a single-chain variable fragment antibody against plumbagin.	Sakamoto S, Putalun W, Pongkitwitoon B, Juengwatanatrakul T, Shoyama Y, Tanaka H, Morimoto S	Plant Cell Rep	10.1007/s00299-011-1143-6	2011	*
Enzymology	Volatile oils from the plant and hairy root cultures of Ageratum conyzoides L.	Abdelkader MS, Lockwood GB	Nat Prod Res	10.1080/14786419.2010.531724	2011	*
Metabolism	Effect of the number of rol genes integrations on phenotypic variation in hairy root-derived Hypericum perforatum L. plants.	Komarovska H, Kosuth J, Giovannini A, Smelcerovic A, Zuehlke S, Cellarova E	Z Naturforsch C J Biosci	10.1515/znc-2010-11-1211	2010	*
Biotechnology	Effect of different strains of Agrobacterium rhizogenes and nature of explants on Plumbago indica hairy root culture with special emphasis on root biomass and plumbagin production.	Gangopadhyay M, Dewanjee S, Bhattacharyya S, Bhattacharya S	Nat Prod Commun		2010	*
Metabolism	Sonication-assisted Agrobacterium rhizogenes-mediated transformation of Verbascum xanthophoeniceum Griseb. for bioactive metabolite accumulation.	Georgiev MI, Ludwig-Muller J, Alipieva K, Lippert A	Plant Cell Rep	10.1007/s00299-010-0981-y	2010	*
Metabolism	[Induction and in vitro culture of Wedelia trilobata hairy roots].	Ou S, Shi H, Tsang EP	Sheng Wu Gong Cheng Xue Bao		2010	*
Metabolism	Dicentrine production from a hairy roots culture of Stephania suberosa.	Putalun W, Yusakul G, Patanasethanont D	Z Naturforsch C J Biosci	10.1515/znc-2009-9-1014	2009	*
Cultivation	Isoflavonoid production in a hairy roots culture of Pueraria candollei.	Udomsuk L, Jarukamjorn K, Tanaka H, Putalun W	Z Naturforsch C J Biosci	10.1515/znc-2009-9-1013	2009	*
Metabolism	Catapol production in Chinese foxglove (Rehmannia glutinosa Libos.) hairy roots transformed with Agrobacterium rhizogenes ATCC15834.	Hwang SJ	Methods Mol Biol	10.1007/978-1-60327-287-2_21	2009	*
Metabolism	Mitragyna speciosa: hairy root culture for triterpenoid production and high yield of mitragynine by regenerated plants.	Phongprueksapattana S, Putalun W, Keawpradub N, Wungsintaweekul J	Z Naturforsch C J Biosci	10.1515/znc-2008-9-1014	2008	*
Metabolism	[Induction and in vitro culture of hairy roots of Solanum nigrum L. var. pauciflorum Liou and its solasodine production].	Wu XF, Shi HP, Tsang P, Keung E	Fen Zi Xi Bao Sheng Wu Xue Bao		2008	*
Phenotype	Transformation of Kalanchoe blossfeldiana with rol-genes is useful in molecular breeding towards compact growth.	Christensen B, Sriskandarajah S, Serek M, Muller R	Plant Cell Rep	10.1007/s00299-008-0575-0	2008	*
Metabolism	[Effects of methyl jasmonat on accumulation and release of tanshinones in suspension cultures of Salvia miltiorrhiza hairy root].	Wang XY, Cui GH, Huang LQ, Qiu DY	Zhongguo Zhong Yao Za Zhi		2007	*
Metabolism	[Hairy roots induction of Phellodendron chinense and production of its active constituents].	Wang YH, Gou XJ, Wu J, Yan WZ, Ma XJ, Yang Y	Zhongguo Zhong Yao Za Zhi		2006	*
Metabolism	Sennosides A and B production by hairy roots of Senna alata (L.) Roxb.	Putalun W, Pimmeuangkao S, De-Eknamkul W, Tanaka H, Shoyama Y	Z Naturforsch C J Biosci	10.1515/znc-2006-5-612	2006	*
Enzymology	Establishment of Salvia officinalis L. hairy root cultures for the production of rosmarinic acid.	Grzegorczyk I, Krolicka A, Wysokinska H	Z Naturforsch C J Biosci	10.1515/znc-2006-5-609	2006	*
Cultivation	[Induction of cucumber hairy roots and effect of cytokinin 6-BA on its growth and morphology].	Shi HP, Qi Y, Zhang Y, Liang S	Sheng Wu Gong Cheng Xue Bao		2006	*
Pathogenicity	The shikonin derivatives and pyrrolizidine alkaloids in hairy root cultures of Lithospermum canescens (Michx.) Lehm.	Pietrosiuk A, Syklowska-Baranek K, Wiedenfeld H, Wolinowska R, Furmanowa M, Jaroszyk E	Plant Cell Rep	10.1007/s00299-006-0161-2	2006	*
Metabolism	Genista tinctoria hairy root cultures for selective production of isoliquiritigenin.	Luczkiewicz M, Kokotkiewicz A	Z Naturforsch C J Biosci	10.1515/znc-2005-11-1209	2005	*
Enzymology	Amplified fragment length polymorphism and metabolomic profiles of hairy roots of Psoralea corylifolia L.	Abhyankar G, Reddy VD, Giri CC, Rao KV, Lakshmi VV, Prabhakar S, Vairamani M, Thippeswamy BS, Bhattacharya PS	Phytochemistry	10.1016/j.phytochem.2005.08.003	2005	*
Enzymology	[Induction of hairy roots of Pueraria phaseoloides and its culture in liquid and solid medium].	Shi HP, Quan H, Spiros K	Sheng Wu Gong Cheng Xue Bao		2003	*
Pathogenicity	[Effect of sucrose concentration on the growth and production of secondary metabolites in Pueraria phaseoloides hairy roots].	Liang P, Shi HP, Qi Y	Shi Yan Sheng Wu Xue Bao		2004	*
Metabolism	Tropane alkaloid production and shoot regeneration in hairy and adventitious root cultures of Duboisia myoporoides-D. leichhardtii hybrid.	Yoshimatsu K, Sudo H, Kamada H, Kiuchi F, Kikuchi Y, Sawada J, Shimomura K	Biol Pharm Bull	10.1248/bpb.27.1261	2004	*
Metabolism	Solasodine glycoside production by hairy root cultures of Physalis minima Linn.	Putalun W, Prasamsiwamai P, Tanaka H, Shoyama Y	Biotechnol Lett	10.1023/b:bile.0000021953.50300.52	2004	*
Pathogenicity	Auxins affected ginsenoside production and growth of hairy roots in Panax hybrid.	Washida D, Shimomura K, Takido M, Kitanaka S	Biol Pharm Bull	10.1248/bpb.27.657	2004	*
Cultivation	[Culture of hairy roots in Pueraria phaseoloides and its puerarin production].	Shi HP, Liang P, Kintzios S	Shi Yan Sheng Wu Xue Bao		2003	*
Genetics	Camptothecin and 10-hydroxycamptothecin from Camptotheca acuminata hairy roots.	Lorence A, Medina-Bolivar F, Nessler CL	Plant Cell Rep	10.1007/s00299-003-0708-4	2003	*
Metabolism	Production of ajmalicine and ajmaline in hairy root cultures of Rauvolfia micrantha Hook f., a rare and endemic medicinal plant.	Sudha CG, Obul Reddy B, Ravishankar GA, Seeni S	Biotechnol Lett	10.1023/a:1023012114628	2003	*
Metabolism	Genetic transformation of Pueraria phaseoloides with Agrobacterium rhizogenes and puerarin production in hairy roots.	Shi HP, Kintzios S	Plant Cell Rep	10.1007/s00299-003-0633-6	2003	*
Cultivation	Colonization of arbuscular-mycorrhizal fungi on Ri T-DNA transformed roots in synthetic medium.	Abdul-Khaliq, Bagyaraj DJ	Indian J Exp Biol		2000	*
Metabolism	The effect of yeast elicitor on the growth and secondary metabolism of hairy root cultures of Salvia miltiorrhiza.	Chen H, Chena F, Chiu FC, Lo CM	Enzyme Microb Technol	10.1016/s0141-0229(00)00284-2	2001	*
Cultivation	High production of ginsenosides by transformed root cultures of Panax ginseng: effect of basal medium and Agrobacterium rhizogenes strains.	Shu W, Yoshimatsu K, Yamaguchi H, Shimomura K	Kokuritsu Iyakuhin Shokuhin Eisei Kenkyusho Hokoku		1999	*
Metabolism	Studies on dynamics of growth and biosynthesis of artemisinin in hairy roots of Artemisia annua L.	Liu B, Ye H, Li G, Chen D, Geng S, Zhang Y, Chen J, Gao J	Chin J Biotechnol		1998	*
Biotechnology	Lobeline production by hairy root culture of Lobelia inflata L.	Yonemitsu H, Shimomura K, Satake M, Mochida S, Tanaka M, Endo T, Kaji A	Plant Cell Rep	10.1007/BF00232857	1990	*
Transcriptome	Transcriptome analysis of genes related to glucoraphanin and sulforaphane synthesis in methyl jasmonate treated broccoli (Brassica oleracea var. italica) hairy roots.	Bao J, Lu X, Ma L, Zhang X, Tian P, Zhang X, Li S, Ma S, Yang J, Lu Y, Wei Y, Zhang C, Shi X	J Plant Res	10.1007/s10265-022-01407-7	2022	*
Metabolism	Glucoraphanin and sulforaphane biosynthesis by melatonin mediating nitric oxide in hairy roots of broccoli (Brassica oleracea L. var. italica Planch): insights from transcriptome data.	Ma S, Bao J, Lu Y, Lu X, Tian P, Zhang X, Yang J, Shi X, Pu Z, Li S	BMC Plant Biol	10.1186/s12870-022-03747-x	2022	*
	Azotobacter chroococcum and Pseudomonas putida enhance pyrroloquinazoline alkaloids accumulation in Adhatoda vasica hairy roots by biotization.	Singh B, Sahu PM, Aloria M, Reddy SS, Prasad J, Sharma RA	J Biotechnol	10.1016/j.jbiotec.2022.05.011	2022	*
	Raise up of Scopolamine in Hairy Roots Via Agrobacterium rhizogenes ATCC15834 as Compared with Untransformed Roots in Atropa komarovii.	Banihashemi O, Khavari-Nejad RA, Yassa N, Najafi F	Iran J Pharm Res	10.22037/ijpr.2019.13550.11710	2020	*
	Developing a Sufficient Protocol for the Enhancement of alpha-Glucosidase Inhibitory Activity by Urena lobata L. Aeroponic Hairy Roots Using Exogenous Factors, a Precursor, and an Elicitor.	Cao DM, Vu PTB, Hoang MTT, Bui AL, Quach PND	Plants (Basel)	10.3390/plants9040548	2020	*
	Influence of different Agrobacterium rhizogenes strains on hairy root induction and analysis of phenolic and flavonoid compounds in marshmallow (Althaea officinalis L.).	Tavassoli P, Safipour Afshar A	3 Biotech	10.1007/s13205-018-1375-z	2018	*
	Optimizing culture conditions for establishment of hairy root culture of Semecarpus anacardium L.	Panda BM, Mehta UJ, Hazra S	3 Biotech	10.1007/s13205-017-0608-x	2017	*
	Potent Antioxidant Properties of rolB-transformed Catharanthus roseus (L.) G. Don.	Mardani-Nejad S, Khavari-Nejad RA, Saadatmand S, Najafi F, Aberoomand Azar P	Iran J Pharm Res		2016	*
	Efficient genetic transformation and regeneration system from hairy root of Origanum vulgare.	Habibi P, de Sa MF, da Silva AL, Makhzoum A, da Luz Costa J, Borghetti IA, Soccol CR	Physiol Mol Biol Plants	10.1007/s12298-016-0354-2	2016	*
	In vitro regeneration and Agrobacterium mediated genetic transformation of Artemisia aucheri Boiss.	Sharafi A, Sohi HH, Mirzaee H, Azadi P	Physiol Mol Biol Plants	10.1007/s12298-014-0248-0	2014	*
	[Induction of polyploid in hairy roots of Nicotiana tabacum and its plant regeneration].	Hou L, Shi H, Yu W, Tsang PK, Chow CF	Sheng Wu Gong Cheng Xue Bao		2014	*
	A reliable and efficient protocol for inducing genetically transformed roots in medicinal plant Nepeta pogonosperma.	Valimehr S, Sanjarian F, Sohi HH, Sharafi A, Sabouni F	Physiol Mol Biol Plants	10.1007/s12298-014-0235-5	2014	*
	Induction of hairy roots by various strains of Agrobacterium rhizogenes in different types of Capsicum species explants.	Md Setamam N, Jaafar Sidik N, Abdul Rahman Z, Che Mohd Zain CR	BMC Res Notes	10.1186/1756-0500-7-414	2014	*
	Hairy root induction and plant regeneration of medicinal plant Dracocephalum kotschyi.	Sharafi A, Sohi HH, Azadi P, Sharafi AA	Physiol Mol Biol Plants	10.1007/s12298-013-0217-z	2014	*
	Agrobacterium rhizogenes-mediated transformation of Hypericum tomentosum L and Hypericum tetrapterum Fries.	Komarovska H, Giovannini A, Kosutha J, Cellarovia E	Z Naturforsch C J Biosci	10.1515/znc-2009-11-1218	2009	*
	[Genetic transformation of autotetraploid Isatis indigotica fort. induced by Ri T-DNA and plant regeneration].	Li BH, Zhang HM, Xu TF, Ding RX	Zhongguo Zhong Yao Za Zhi		2000	*
	An unusual root tip formation in hairy root culture of Hyoscyamus muticus.	Jaziri M, Homes J, Shimomura K	Plant Cell Rep	10.1007/BF00232635	1994	*
	Agrobacterium rhizogenes-mediated transformation of Echinacea purpurea.	Trypsteen M, Van Lijsebettens M, Van Severen R, Van Montagu M	Plant Cell Rep	10.1007/BF00236463	1991	*
	Effects of various Agrobacterium rhizogenes strains on hairy root induction and analyses of primary and secondary metabolites in Ocimum basilicum.	Sathasivam R, Choi M, Radhakrishnan R, Kwon H, Yoon J, Yang SH, Kim JK, Chung YS, Park SU	Front Plant Sci	10.3389/fpls.2022.983776	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#35729 Collection of Institut Pasteur ; Curators of the CIP; CIP 104786

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#93515

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID444.1 )

* These data were automatically processed and therefore are not curated

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Agrobacterium rhizogenes strain LMG152

Agrobacterium rhizogenes strain ATCC 15834

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