Shigella boydii (CIP 58.19, ATCC 12034, NCTC 9365)

Name: Shigella boydii (CIP 58.19, ATCC 12034, NCTC 9365)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135608

Type strain

Strain Designation 703

Culture col. no. CIP 58.19 ATCC 12034 NCTC 9365 703

NCBI tax ID(s) 621

Special Collections CIP

History 1958, Dysentery Ref. Lab., Oxford, UK: strain 703 CIP <- 1958, Dysentery Ref. Lab., Oxford, UK: strain 703

Links

Shigella boydii 703 is a mesophilic prokaryote of the family Enterobacteriaceae.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 35482

ATCC 12034,NCTC 9365,CIP 58.19,KACC 10792

@ref 20215

Last LPSN update 2026-02-09 11:32:28

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Shigella

Species Shigella boydii

Full scientific name Shigella boydii Ewing 1949 (Approved Lists 1980)

BacDive ID	Other strains from **Shigella boydii** (38)	Type strain
5174	S. boydii P288, DSM 7532, ATCC 8700, CCUG 49022, CIP ... (type strain)
134546	S. boydii 54264, CIP 54.75
134560	S. boydii 75-25-3, CIP 54.108
134619	S. boydii 901, CIP 57.47, NCTC 9356
134723	S. boydii CIP 56.36
134737	S. boydii 4350-54, CIP 58.18, NCTC 9765
134833	S. boydii 258, CIP 73.2
134919	S. boydii 7001, CIP 54.73
135166	S. boydii 2045-54, 425, CIP 58.22, NCTC 9362, CCUG ...
135299	S. boydii 541106, CIP 56.18
135607	S. boydii 2770/51, CIP 58.17, ATCC 12035, NCTC 9766
135653	S. boydii 140/56, 5518/56, CIP 67.11
135895	S. boydii D 27, CIP 53.42
135972	S. boydii Nil-2-c, CIP 52.50, NCTC 9329
135996	S. boydii H 21582, CIP 51.6
136410	S. boydii A12, CIP 53.44, NCTC 6721
136484	S. boydii 54125, CIP 54.76
137104	S. boydii 55, CIP 56.35
137108	S. boydii CIP 58.20, NCTC 10024, DRL 120/55
137109	S. boydii 425, CIP 58.21, ATCC 12032, NCTC 9361
137192	S. boydii type, CIP 52.48
137768	S. boydii 426/FA, CIP 52.52, NCTC 9331
137769	S. boydii 6917, CIP 52.54, NCTC 9333
138575	S. boydii 1296/7, CIP 51.4, NCTC 9355
138576	S. boydii Congo, CIP 51.3
138591	S. boydii PSH-125, CIP 52.51, NCTC 9330
138593	S. boydii M 279, CIP 52.53, NCTC 9332
138842	S. boydii 592, CIP 58.4
138844	S. boydii 123, CIP 58.23, ATCC 12033, NCTC 9772
138845	S. boydii 1693, CIP 58.24
141992	S. boydii CCUG 9564, NCTC 9357
143796	S. boydii CCUG 21249
143801	S. boydii CCUG 21261
149519	S. boydii CCUG 37891
149520	S. boydii CCUG 37892
149521	S. boydii CCUG 37893
151867	S. boydii CCUG 45096
171284	S. boydii CIP 111949

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.694

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
34782	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
34782	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
34782	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	90.6

Spore formation

@ref	Spore formation	Confidence
125439		90.4

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
34782	2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM296813v1 assembly for Shigella boydii ATCC 12034	scaffold	GCA_002968135	621.229	8020743412	621	76.11

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shigella boydii ATCC 12034
NCBI: GCA_002968135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	90.40	no
125439	motility	BacteriaNetⓘ	no	52.70	no
125439	gram_stain	BacteriaNetⓘ	negative	87.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shigella boydii ATCC 12034
NCBI: GCA_002968135.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.69	no
125438	anaerobic	anaerobicⓘ	no	95.78	no
125438	aerobic	aerobicⓘ	no	62.04	no
125438	spore-forming	spore-formingⓘ	no	85.95	no
125438	thermophilic	thermophileⓘ	no	97.50	no
125438	flagellated	motile2+ⓘ	yes	75.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Selection and validation of a multilocus variable-number tandem-repeat analysis panel for typing Shigella spp.	Gorge O, Lopez S, Hilaire V, Lisanti O, Ramisse V, Vergnaud G.	J Clin Microbiol	10.1128/jcm.02027-07	2008
	Graphene oxide-based electrochemical activation of ethionamide towards enhanced biological activity.	Mulik BB, Dhumal ST, Sapner VS, Rehman NNMA, Dixit PP, Sathe BR.	RSC Adv	10.1039/c9ra06681k	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#34782	Collection of Institut Pasteur ; Curators of the CIP; CIP 58.19
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shigella boydii (CIP 58.19, ATCC 12034, NCTC 9365)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002968135

Genome-based predictions

Predictions

Literature

Literature

References

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