Name: Shigella boydii 703
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 135608

Type strain:

Species: Shigella boydii

Strain Designation: 703

Culture col. no.: CIP 58.19, ATCC 12034, NCTC 9365

Strain history: CIP <- 1958, Dysentery Ref. Lab., Oxford, UK: strain 703

NCBI tax ID(s): 621 (species)

SI-ID 35482

ATCC 12034, NCTC 9365, CIP 58.19, KACC 10792

Special Collections

Other strains from Shigella boydii

Section

Shigella boydii 703 is a Gram-negative bacterium of the family Enterobacteriaceae.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Shigella*
	Species	**Shigella boydii**
	Full Scientific Name (LPSN)	Shigella boydii Ewing 1949 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.694

Information on culture and growth conditions Culture and growth conditions

[Ref.: #34782]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34782]

Culture medium growth

[Ref.: #34782]

Culture medium composition

expand / minimize

[Ref.: #34782]

Culture medium

CIP Medium 3

[Ref.: #34782]

Culture medium growth

[Ref.: #34782]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #34782]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #34782]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shigella boydii ATCC 12034	GCA_002968135	scaffold	GenBank ENA	621 tax ID	*
[Ref.: #66792]	Shigella boydii strain ATCC 12034	621.229	wgs	PATRIC	621 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shigella boydii ATCC 12034 NCBI: GCA_002968135.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shigella boydii ATCC 12034 NCBI: GCA_002968135.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.694	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.779	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	62.043	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.948	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	75.743	no

Availability in culture collections External links

[Ref.: #34782]

Culture collection no.

CIP 58.19, ATCC 12034, NCTC 9365

[Ref.: #92932]

SI-ID 35482

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34782 Collection of Institut Pasteur ; Curators of the CIP; CIP 58.19

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#92932

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID35482.1 )

* These data were automatically processed and therefore are not curated

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Shigella boydii ATCC 12034

Shigella boydii ATCC 12034

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